Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26220

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26215 and AO356_26220 overlap by 4 nucleotidesAO356_26220 and AO356_26225 are separated by 447 nucleotides AO356_26215: AO356_26215 - AraC family transcriptional regulator, at 5,937,142 to 5,938,179 _26215 AO356_26220: AO356_26220 - diguanylate cyclase, at 5,938,176 to 5,939,090 _26220 AO356_26225: AO356_26225 - TonB-dependent receptor, at 5,939,538 to 5,942,066 _26225 Position (kb) 5938 5939 5940Strain fitness (log2 ratio) -1 0 1 2at 5937.239 kb on + strandat 5937.278 kb on + strand, within AO356_26215at 5937.284 kb on + strand, within AO356_26215at 5937.284 kb on + strand, within AO356_26215at 5937.285 kb on - strand, within AO356_26215at 5937.440 kb on + strand, within AO356_26215at 5937.617 kb on - strand, within AO356_26215at 5937.782 kb on + strandat 5937.782 kb on + strand, within AO356_26215at 5937.783 kb on - strand, within AO356_26215at 5937.788 kb on + strand, within AO356_26215at 5937.788 kb on + strand, within AO356_26215at 5937.789 kb on - strand, within AO356_26215at 5937.968 kb on - strand, within AO356_26215at 5938.125 kb on - strandat 5938.157 kb on + strandat 5938.726 kb on + strand, within AO356_26220at 5938.727 kb on - strand, within AO356_26220at 5938.876 kb on + strand, within AO356_26220at 5938.876 kb on + strand, within AO356_26220at 5939.411 kb on + strandat 5939.541 kb on + strandat 5939.541 kb on + strandat 5939.542 kb on - strandat 5940.067 kb on - strand, within AO356_26225at 5940.090 kb on + strand, within AO356_26225

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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5,937,239 + -1.6
5,937,278 + AO356_26215 0.13 -0.3
5,937,284 + AO356_26215 0.14 +0.3
5,937,284 + AO356_26215 0.14 -1.3
5,937,285 - AO356_26215 0.14 +1.0
5,937,440 + AO356_26215 0.29 +1.6
5,937,617 - AO356_26215 0.46 -0.0
5,937,782 + -0.3
5,937,782 + AO356_26215 0.62 +1.3
5,937,783 - AO356_26215 0.62 -0.4
5,937,788 + AO356_26215 0.62 +0.6
5,937,788 + AO356_26215 0.62 +1.7
5,937,789 - AO356_26215 0.62 -1.1
5,937,968 - AO356_26215 0.80 -0.0
5,938,125 - +0.3
5,938,157 + -0.4
5,938,726 + AO356_26220 0.60 +1.4
5,938,727 - AO356_26220 0.60 +0.6
5,938,876 + AO356_26220 0.77 +0.5
5,938,876 + AO356_26220 0.77 +1.8
5,939,411 + +0.8
5,939,541 + +0.7
5,939,541 + -0.3
5,939,542 - +0.3
5,940,067 - AO356_26225 0.21 -1.4
5,940,090 + AO356_26225 0.22 -1.4

Or see this region's nucleotide sequence