Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16685

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16680 and AO356_16685 are separated by 60 nucleotidesAO356_16685 and AO356_16690 overlap by 32 nucleotidesAO356_16690 and AO356_16695 are separated by 115 nucleotides AO356_16680: AO356_16680 - phosphate acetyltransferase, at 3,762,787 to 3,764,886 _16680 AO356_16685: AO356_16685 - pressure-regulated protein, at 3,764,947 to 3,765,285 _16685 AO356_16690: AO356_16690 - peptidylprolyl isomerase, at 3,765,254 to 3,765,739 _16690 AO356_16695: AO356_16695 - glutathione peroxidase, at 3,765,855 to 3,766,337 _16695 Position (kb) 3764 3765 3766Strain fitness (log2 ratio) -1 0 1 2at 3764.104 kb on + strand, within AO356_16680at 3764.192 kb on + strand, within AO356_16680at 3764.192 kb on + strand, within AO356_16680at 3764.193 kb on - strand, within AO356_16680at 3764.193 kb on - strand, within AO356_16680at 3764.438 kb on - strand, within AO356_16680at 3764.438 kb on - strand, within AO356_16680at 3764.541 kb on - strand, within AO356_16680at 3764.541 kb on - strand, within AO356_16680at 3764.609 kb on + strand, within AO356_16680at 3764.814 kb on + strandat 3764.872 kb on - strandat 3764.897 kb on + strandat 3764.898 kb on - strandat 3764.923 kb on + strandat 3764.923 kb on + strandat 3764.923 kb on + strandat 3764.923 kb on + strandat 3764.923 kb on + strandat 3764.923 kb on + strandat 3764.923 kb on + strandat 3765.022 kb on - strand, within AO356_16685at 3765.022 kb on - strand, within AO356_16685at 3765.022 kb on - strand, within AO356_16685at 3765.022 kb on - strand, within AO356_16685at 3765.211 kb on + strand, within AO356_16685at 3765.211 kb on + strand, within AO356_16685at 3765.234 kb on + strand, within AO356_16685at 3765.234 kb on + strand, within AO356_16685at 3765.234 kb on + strand, within AO356_16685at 3765.235 kb on - strand, within AO356_16685at 3765.235 kb on - strand, within AO356_16685at 3765.271 kb on + strandat 3765.271 kb on + strandat 3765.272 kb on - strandat 3765.272 kb on - strandat 3765.272 kb on - strandat 3765.290 kb on + strandat 3765.290 kb on + strandat 3765.291 kb on - strandat 3765.291 kb on - strandat 3765.291 kb on - strandat 3765.291 kb on - strandat 3765.291 kb on - strandat 3765.291 kb on - strandat 3765.291 kb on - strandat 3765.292 kb on + strandat 3765.292 kb on + strandat 3765.292 kb on + strandat 3765.292 kb on + strandat 3765.292 kb on + strandat 3765.292 kb on + strandat 3765.292 kb on + strandat 3765.293 kb on - strandat 3765.293 kb on - strandat 3765.293 kb on - strandat 3765.293 kb on - strandat 3765.293 kb on - strandat 3765.293 kb on - strandat 3765.353 kb on + strand, within AO356_16690at 3765.353 kb on + strand, within AO356_16690at 3765.354 kb on - strand, within AO356_16690at 3765.354 kb on - strand, within AO356_16690at 3765.407 kb on - strand, within AO356_16690at 3765.456 kb on - strand, within AO356_16690at 3765.464 kb on + strand, within AO356_16690at 3765.791 kb on - strandat 3765.791 kb on - strandat 3765.804 kb on + strandat 3765.804 kb on + strandat 3765.876 kb on - strandat 3765.876 kb on - strandat 3765.876 kb on - strandat 3765.978 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.008 kb on + strand, within AO356_16695at 3766.009 kb on - strand, within AO356_16695at 3766.009 kb on - strand, within AO356_16695at 3766.009 kb on - strand, within AO356_16695at 3766.009 kb on - strand, within AO356_16695at 3766.009 kb on - strand, within AO356_16695at 3766.009 kb on - strand, within AO356_16695at 3766.009 kb on - strand, within AO356_16695at 3766.110 kb on + strand, within AO356_16695at 3766.111 kb on - strand, within AO356_16695at 3766.111 kb on - strand, within AO356_16695at 3766.111 kb on - strand, within AO356_16695at 3766.111 kb on - strand, within AO356_16695at 3766.173 kb on + strand, within AO356_16695at 3766.174 kb on - strand, within AO356_16695at 3766.174 kb on - strand, within AO356_16695at 3766.174 kb on - strand, within AO356_16695at 3766.217 kb on + strand, within AO356_16695at 3766.217 kb on + strand, within AO356_16695at 3766.217 kb on + strand, within AO356_16695at 3766.217 kb on + strand, within AO356_16695at 3766.217 kb on + strand, within AO356_16695at 3766.218 kb on - strand, within AO356_16695

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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3,764,104 + AO356_16680 0.63 -0.1
3,764,192 + AO356_16680 0.67 -0.0
3,764,192 + AO356_16680 0.67 +0.4
3,764,193 - AO356_16680 0.67 +0.9
3,764,193 - AO356_16680 0.67 +0.5
3,764,438 - AO356_16680 0.79 +0.7
3,764,438 - AO356_16680 0.79 +0.9
3,764,541 - AO356_16680 0.84 -0.1
3,764,541 - AO356_16680 0.84 -0.2
3,764,609 + AO356_16680 0.87 -0.4
3,764,814 + +0.5
3,764,872 - +0.6
3,764,897 + -0.7
3,764,898 - +0.0
3,764,923 + +1.0
3,764,923 + -1.1
3,764,923 + -0.4
3,764,923 + +0.4
3,764,923 + -0.8
3,764,923 + -0.4
3,764,923 + +1.0
3,765,022 - AO356_16685 0.22 -0.6
3,765,022 - AO356_16685 0.22 +0.4
3,765,022 - AO356_16685 0.22 -0.3
3,765,022 - AO356_16685 0.22 -0.7
3,765,211 + AO356_16685 0.78 -0.4
3,765,211 + AO356_16685 0.78 +1.6
3,765,234 + AO356_16685 0.85 -0.2
3,765,234 + AO356_16685 0.85 -0.7
3,765,234 + AO356_16685 0.85 -1.4
3,765,235 - AO356_16685 0.85 +0.5
3,765,235 - AO356_16685 0.85 -0.8
3,765,271 + -0.1
3,765,271 + +0.6
3,765,272 - +0.8
3,765,272 - +0.7
3,765,272 - +1.0
3,765,290 + +0.7
3,765,290 + -0.2
3,765,291 - -0.3
3,765,291 - -0.2
3,765,291 - +0.2
3,765,291 - -0.0
3,765,291 - +0.2
3,765,291 - +0.2
3,765,291 - +1.2
3,765,292 + -0.2
3,765,292 + -0.1
3,765,292 + +1.0
3,765,292 + -0.2
3,765,292 + -0.5
3,765,292 + -0.5
3,765,292 + +0.2
3,765,293 - +0.4
3,765,293 - +0.0
3,765,293 - +0.0
3,765,293 - -0.2
3,765,293 - -1.2
3,765,293 - -0.6
3,765,353 + AO356_16690 0.20 +0.6
3,765,353 + AO356_16690 0.20 +1.3
3,765,354 - AO356_16690 0.21 +0.2
3,765,354 - AO356_16690 0.21 +1.7
3,765,407 - AO356_16690 0.31 +0.2
3,765,456 - AO356_16690 0.42 +1.0
3,765,464 + AO356_16690 0.43 -0.5
3,765,791 - +1.6
3,765,791 - +0.7
3,765,804 + -0.4
3,765,804 + +0.8
3,765,876 - +0.3
3,765,876 - +1.1
3,765,876 - +0.7
3,765,978 + AO356_16695 0.25 +1.3
3,766,008 + AO356_16695 0.32 -0.2
3,766,008 + AO356_16695 0.32 -0.7
3,766,008 + AO356_16695 0.32 +0.1
3,766,008 + AO356_16695 0.32 +1.2
3,766,008 + AO356_16695 0.32 +0.0
3,766,008 + AO356_16695 0.32 +0.5
3,766,008 + AO356_16695 0.32 +0.6
3,766,008 + AO356_16695 0.32 +0.1
3,766,008 + AO356_16695 0.32 -1.4
3,766,008 + AO356_16695 0.32 +0.3
3,766,009 - AO356_16695 0.32 +0.3
3,766,009 - AO356_16695 0.32 +0.9
3,766,009 - AO356_16695 0.32 +0.1
3,766,009 - AO356_16695 0.32 -0.1
3,766,009 - AO356_16695 0.32 +0.7
3,766,009 - AO356_16695 0.32 +2.0
3,766,009 - AO356_16695 0.32 -0.3
3,766,110 + AO356_16695 0.53 -0.0
3,766,111 - AO356_16695 0.53 -1.4
3,766,111 - AO356_16695 0.53 +0.3
3,766,111 - AO356_16695 0.53 +1.3
3,766,111 - AO356_16695 0.53 -0.4
3,766,173 + AO356_16695 0.66 -0.8
3,766,174 - AO356_16695 0.66 -0.2
3,766,174 - AO356_16695 0.66 -0.3
3,766,174 - AO356_16695 0.66 +0.0
3,766,217 + AO356_16695 0.75 +0.7
3,766,217 + AO356_16695 0.75 -0.5
3,766,217 + AO356_16695 0.75 +0.5
3,766,217 + AO356_16695 0.75 -1.3
3,766,217 + AO356_16695 0.75 -1.4
3,766,218 - AO356_16695 0.75 +0.3

Or see this region's nucleotide sequence