Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0028

Experiment: MoLS4 without Folic with Casamino acids (vit. assay) 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatoC and DVUA0025 overlap by 49 nucleotidesDVUA0025 and DVUA0028 are separated by 345 nucleotidesDVUA0028 and DVUA0029 are separated by 120 nucleotides DVUA0024: atoC - sigma-54 interaction domain protein (TIGR), at 29,689 to 30,828 atoC DVUA0025: DVUA0025 - response regulator receiver domain protein (TIGR), at 30,780 to 31,241 DVUA0025 DVUA0028: DVUA0028 - hypothetical protein (TIGR), at 31,587 to 31,997 DVUA0028 DVUA0029: DVUA0029 - hypothetical protein (TIGR), at 32,118 to 32,798 DVUA0029 Position (kb) 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1at 30.587 kb on + strand, within atoCat 30.679 kb on + strand, within atoCat 30.687 kb on - strand, within atoCat 30.687 kb on - strand, within atoCat 30.719 kb on - strandat 30.764 kb on + strandat 30.793 kb on + strandat 30.817 kb on - strandat 30.856 kb on - strand, within DVUA0025at 30.872 kb on + strand, within DVUA0025at 30.906 kb on + strand, within DVUA0025at 30.942 kb on - strand, within DVUA0025at 30.977 kb on - strand, within DVUA0025at 31.002 kb on - strand, within DVUA0025at 31.034 kb on + strand, within DVUA0025at 31.042 kb on - strand, within DVUA0025at 31.042 kb on - strand, within DVUA0025at 31.049 kb on + strand, within DVUA0025at 31.057 kb on - strand, within DVUA0025at 31.074 kb on + strand, within DVUA0025at 31.082 kb on - strand, within DVUA0025at 31.093 kb on - strand, within DVUA0025at 31.093 kb on - strand, within DVUA0025at 31.205 kb on + strandat 31.208 kb on - strandat 31.213 kb on - strandat 31.213 kb on - strandat 31.271 kb on - strandat 31.306 kb on - strandat 31.635 kb on - strand, within DVUA0028at 31.635 kb on - strand, within DVUA0028at 31.635 kb on - strand, within DVUA0028at 31.660 kb on + strand, within DVUA0028at 32.389 kb on + strand, within DVUA0029at 32.503 kb on - strand, within DVUA0029at 32.508 kb on + strand, within DVUA0029at 32.528 kb on - strand, within DVUA0029at 32.543 kb on - strand, within DVUA0029at 32.560 kb on + strand, within DVUA0029at 32.568 kb on - strand, within DVUA0029at 32.662 kb on - strand, within DVUA0029at 32.678 kb on + strand, within DVUA0029at 32.742 kb on + strandat 32.761 kb on - strandat 32.813 kb on + strandat 32.818 kb on + strandat 32.821 kb on - strandat 32.821 kb on - strandat 32.837 kb on - strandat 32.850 kb on + strandat 32.869 kb on - strandat 32.871 kb on - strandat 32.885 kb on + strandat 32.903 kb on - strandat 32.922 kb on + strandat 32.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without Folic with Casamino acids (vit. assay) 0.05%
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30,587 + atoC DVUA0024 0.79 -0.5
30,679 + atoC DVUA0024 0.87 -0.4
30,687 - atoC DVUA0024 0.88 -0.1
30,687 - atoC DVUA0024 0.88 -0.1
30,719 - -0.5
30,764 + -0.4
30,793 + -0.9
30,817 - -0.4
30,856 - DVUA0025 0.16 +0.9
30,872 + DVUA0025 0.20 -2.2
30,906 + DVUA0025 0.27 -0.5
30,942 - DVUA0025 0.35 -0.2
30,977 - DVUA0025 0.43 -1.3
31,002 - DVUA0025 0.48 +0.6
31,034 + DVUA0025 0.55 +0.0
31,042 - DVUA0025 0.57 -0.2
31,042 - DVUA0025 0.57 -0.7
31,049 + DVUA0025 0.58 +0.8
31,057 - DVUA0025 0.60 -0.1
31,074 + DVUA0025 0.64 -0.1
31,082 - DVUA0025 0.65 +0.3
31,093 - DVUA0025 0.68 +0.5
31,093 - DVUA0025 0.68 +0.6
31,205 + +0.3
31,208 - -0.2
31,213 - -0.3
31,213 - +0.2
31,271 - -0.4
31,306 - -0.3
31,635 - DVUA0028 0.12 -0.1
31,635 - DVUA0028 0.12 -1.5
31,635 - DVUA0028 0.12 -0.6
31,660 + DVUA0028 0.18 -3.0
32,389 + DVUA0029 0.40 -0.0
32,503 - DVUA0029 0.57 -1.3
32,508 + DVUA0029 0.57 +1.0
32,528 - DVUA0029 0.60 +0.6
32,543 - DVUA0029 0.62 -0.9
32,560 + DVUA0029 0.65 +0.5
32,568 - DVUA0029 0.66 +0.9
32,662 - DVUA0029 0.80 -0.1
32,678 + DVUA0029 0.82 -0.1
32,742 + -0.5
32,761 - +0.1
32,813 + -0.1
32,818 + -0.2
32,821 - +0.3
32,821 - -1.3
32,837 - +0.5
32,850 + +0.0
32,869 - -0.2
32,871 - +0.4
32,885 + -0.7
32,903 - -0.7
32,922 + -0.2
32,953 + -0.8

Or see this region's nucleotide sequence