Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29135

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29130 and AO356_29135 are separated by 126 nucleotidesAO356_29135 and AO356_29140 are separated by 4 nucleotides AO356_29130: AO356_29130 - MFS transporter, at 6,771,246 to 6,772,445 _29130 AO356_29135: AO356_29135 - RND transporter, at 6,772,572 to 6,775,103 _29135 AO356_29140: AO356_29140 - BNR domain-containing protein, at 6,775,108 to 6,776,211 _29140 Position (kb) 6772 6773 6774 6775 6776Strain fitness (log2 ratio) -2 -1 0 1 2at 6771.755 kb on - strand, within AO356_29130at 6771.812 kb on - strand, within AO356_29130at 6771.932 kb on - strand, within AO356_29130at 6772.057 kb on + strand, within AO356_29130at 6772.057 kb on + strand, within AO356_29130at 6772.058 kb on - strand, within AO356_29130at 6772.060 kb on + strand, within AO356_29130at 6772.183 kb on + strand, within AO356_29130at 6772.341 kb on - strandat 6772.538 kb on + strandat 6772.589 kb on + strandat 6772.965 kb on - strand, within AO356_29135at 6772.990 kb on + strand, within AO356_29135at 6772.990 kb on + strand, within AO356_29135at 6772.990 kb on + strand, within AO356_29135at 6772.991 kb on - strand, within AO356_29135at 6773.179 kb on + strand, within AO356_29135at 6773.362 kb on + strand, within AO356_29135at 6773.455 kb on + strand, within AO356_29135at 6773.683 kb on + strand, within AO356_29135at 6773.684 kb on - strand, within AO356_29135at 6773.921 kb on - strand, within AO356_29135at 6774.306 kb on + strand, within AO356_29135at 6774.325 kb on + strand, within AO356_29135at 6774.452 kb on - strand, within AO356_29135at 6774.534 kb on + strand, within AO356_29135at 6774.534 kb on + strand, within AO356_29135at 6774.640 kb on + strand, within AO356_29135at 6774.727 kb on + strand, within AO356_29135at 6774.727 kb on + strand, within AO356_29135at 6774.728 kb on - strand, within AO356_29135at 6774.728 kb on - strand, within AO356_29135at 6774.755 kb on - strand, within AO356_29135at 6774.802 kb on + strand, within AO356_29135at 6774.803 kb on - strand, within AO356_29135at 6774.881 kb on - strandat 6774.881 kb on - strandat 6774.881 kb on - strandat 6774.892 kb on + strandat 6774.893 kb on - strandat 6776.068 kb on + strand, within AO356_29140

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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6,771,755 - AO356_29130 0.42 -2.4
6,771,812 - AO356_29130 0.47 +1.1
6,771,932 - AO356_29130 0.57 -0.4
6,772,057 + AO356_29130 0.68 +0.9
6,772,057 + AO356_29130 0.68 -0.2
6,772,058 - AO356_29130 0.68 +0.8
6,772,060 + AO356_29130 0.68 +0.8
6,772,183 + AO356_29130 0.78 -0.3
6,772,341 - +0.2
6,772,538 + -0.2
6,772,589 + -1.4
6,772,965 - AO356_29135 0.16 +0.2
6,772,990 + AO356_29135 0.17 -0.3
6,772,990 + AO356_29135 0.17 +0.3
6,772,990 + AO356_29135 0.17 +0.8
6,772,991 - AO356_29135 0.17 +1.7
6,773,179 + AO356_29135 0.24 +0.1
6,773,362 + AO356_29135 0.31 +0.2
6,773,455 + AO356_29135 0.35 -0.4
6,773,683 + AO356_29135 0.44 +0.7
6,773,684 - AO356_29135 0.44 -1.0
6,773,921 - AO356_29135 0.53 +0.9
6,774,306 + AO356_29135 0.68 +0.3
6,774,325 + AO356_29135 0.69 -0.3
6,774,452 - AO356_29135 0.74 +0.1
6,774,534 + AO356_29135 0.77 -0.3
6,774,534 + AO356_29135 0.77 -1.4
6,774,640 + AO356_29135 0.82 -1.3
6,774,727 + AO356_29135 0.85 -0.5
6,774,727 + AO356_29135 0.85 -1.1
6,774,728 - AO356_29135 0.85 -0.5
6,774,728 - AO356_29135 0.85 +0.9
6,774,755 - AO356_29135 0.86 +0.2
6,774,802 + AO356_29135 0.88 -0.2
6,774,803 - AO356_29135 0.88 -2.6
6,774,881 - +0.5
6,774,881 - +0.6
6,774,881 - -2.5
6,774,892 + +1.8
6,774,893 - -0.4
6,776,068 + AO356_29140 0.87 -1.9

Or see this region's nucleotide sequence