Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22595

Experiment: Carbon source Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22590 and AO356_22595 are separated by 128 nucleotides AO356_22590: AO356_22590 - 2,4-dienoyl-CoA reductase, at 5,047,705 to 5,048,937 _22590 AO356_22595: AO356_22595 - regulation of enolase 1, at 5,049,066 to 5,049,650 _22595 Position (kb) 5049 5050Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5048.070 kb on - strand, within AO356_22590at 5048.224 kb on + strand, within AO356_22590at 5048.483 kb on - strand, within AO356_22590at 5048.542 kb on + strand, within AO356_22590at 5048.542 kb on + strand, within AO356_22590at 5048.543 kb on - strand, within AO356_22590at 5048.543 kb on - strand, within AO356_22590at 5048.609 kb on + strand, within AO356_22590at 5048.609 kb on + strand, within AO356_22590at 5048.610 kb on - strand, within AO356_22590at 5048.610 kb on - strand, within AO356_22590at 5048.847 kb on - strandat 5048.847 kb on - strandat 5048.847 kb on - strandat 5048.856 kb on - strandat 5048.919 kb on - strandat 5048.992 kb on + strandat 5048.992 kb on + strandat 5048.992 kb on + strandat 5048.992 kb on + strandat 5048.992 kb on + strandat 5048.992 kb on + strandat 5048.992 kb on + strandat 5049.302 kb on + strand, within AO356_22595at 5049.436 kb on + strand, within AO356_22595at 5049.532 kb on + strand, within AO356_22595at 5049.533 kb on - strand, within AO356_22595at 5049.535 kb on + strand, within AO356_22595at 5049.535 kb on + strand, within AO356_22595at 5049.535 kb on + strand, within AO356_22595at 5049.535 kb on + strand, within AO356_22595at 5049.535 kb on + strand, within AO356_22595at 5049.535 kb on + strand, within AO356_22595at 5049.536 kb on - strand, within AO356_22595at 5049.536 kb on - strand, within AO356_22595at 5049.536 kb on - strand, within AO356_22595at 5049.536 kb on - strand, within AO356_22595at 5049.536 kb on - strand, within AO356_22595at 5049.536 kb on - strand, within AO356_22595at 5049.570 kb on + strand, within AO356_22595at 5049.600 kb on - strandat 5049.601 kb on + strandat 5049.601 kb on + strandat 5049.601 kb on + strandat 5049.601 kb on + strandat 5049.601 kb on + strandat 5049.602 kb on - strandat 5049.602 kb on - strandat 5049.602 kb on - strandat 5049.602 kb on - strandat 5049.602 kb on - strandat 5049.602 kb on - strandat 5049.643 kb on - strandat 5049.666 kb on + strandat 5049.667 kb on - strandat 5049.683 kb on - strandat 5049.693 kb on + strandat 5049.693 kb on + strandat 5049.693 kb on + strandat 5049.693 kb on + strandat 5049.693 kb on + strandat 5049.693 kb on + strandat 5049.693 kb on + strandat 5049.694 kb on - strandat 5049.694 kb on - strandat 5049.694 kb on - strandat 5049.694 kb on - strandat 5049.697 kb on + strandat 5049.698 kb on - strandat 5049.698 kb on - strandat 5049.784 kb on + strandat 5049.784 kb on + strandat 5049.812 kb on - strandat 5049.812 kb on - strandat 5049.812 kb on - strandat 5049.812 kb on - strandat 5049.812 kb on - strandat 5049.812 kb on - strandat 5049.937 kb on + strandat 5049.938 kb on - strandat 5049.938 kb on - strandat 5049.958 kb on + strandat 5049.959 kb on - strandat 5049.976 kb on - strandat 5049.990 kb on - strandat 5050.021 kb on + strandat 5050.021 kb on + strandat 5050.022 kb on - strandat 5050.022 kb on - strandat 5050.028 kb on - strandat 5050.040 kb on - strandat 5050.059 kb on + strandat 5050.060 kb on - strandat 5050.060 kb on - strandat 5050.153 kb on + strandat 5050.153 kb on + strandat 5050.153 kb on + strandat 5050.153 kb on + strandat 5050.154 kb on - strandat 5050.159 kb on + strandat 5050.241 kb on + strandat 5050.242 kb on - strandat 5050.321 kb on + strandat 5050.322 kb on - strandat 5050.378 kb on + strandat 5050.398 kb on - strandat 5050.398 kb on - strandat 5050.409 kb on + strandat 5050.416 kb on - strandat 5050.416 kb on - strandat 5050.421 kb on + strandat 5050.505 kb on - strandat 5050.505 kb on - strandat 5050.505 kb on - strandat 5050.549 kb on + strandat 5050.549 kb on + strandat 5050.549 kb on + strandat 5050.549 kb on + strandat 5050.550 kb on - strandat 5050.550 kb on - strandat 5050.550 kb on - strandat 5050.577 kb on + strandat 5050.577 kb on + strandat 5050.578 kb on - strandat 5050.579 kb on + strandat 5050.579 kb on + strandat 5050.580 kb on - strandat 5050.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
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5,048,070 - AO356_22590 0.30 +0.4
5,048,224 + AO356_22590 0.42 +0.6
5,048,483 - AO356_22590 0.63 +0.1
5,048,542 + AO356_22590 0.68 -0.9
5,048,542 + AO356_22590 0.68 +0.4
5,048,543 - AO356_22590 0.68 +0.4
5,048,543 - AO356_22590 0.68 +0.3
5,048,609 + AO356_22590 0.73 -2.3
5,048,609 + AO356_22590 0.73 -0.6
5,048,610 - AO356_22590 0.73 -1.1
5,048,610 - AO356_22590 0.73 +0.0
5,048,847 - -0.2
5,048,847 - -0.8
5,048,847 - -0.1
5,048,856 - -0.4
5,048,919 - -0.5
5,048,992 + -0.4
5,048,992 + +0.3
5,048,992 + +0.5
5,048,992 + -0.6
5,048,992 + +0.4
5,048,992 + +0.0
5,048,992 + +0.6
5,049,302 + AO356_22595 0.40 +0.4
5,049,436 + AO356_22595 0.63 +0.6
5,049,532 + AO356_22595 0.80 -0.8
5,049,533 - AO356_22595 0.80 -0.9
5,049,535 + AO356_22595 0.80 +0.6
5,049,535 + AO356_22595 0.80 -0.8
5,049,535 + AO356_22595 0.80 -0.5
5,049,535 + AO356_22595 0.80 +0.9
5,049,535 + AO356_22595 0.80 +0.7
5,049,535 + AO356_22595 0.80 -0.2
5,049,536 - AO356_22595 0.80 -1.0
5,049,536 - AO356_22595 0.80 +0.5
5,049,536 - AO356_22595 0.80 +0.1
5,049,536 - AO356_22595 0.80 +0.3
5,049,536 - AO356_22595 0.80 +0.6
5,049,536 - AO356_22595 0.80 +0.3
5,049,570 + AO356_22595 0.86 +0.6
5,049,600 - -0.4
5,049,601 + +0.9
5,049,601 + -0.1
5,049,601 + -0.1
5,049,601 + +0.9
5,049,601 + +1.0
5,049,602 - +0.1
5,049,602 - +0.9
5,049,602 - +0.3
5,049,602 - -1.0
5,049,602 - +1.3
5,049,602 - -0.8
5,049,643 - -3.0
5,049,666 + +0.6
5,049,667 - -0.3
5,049,683 - +0.2
5,049,693 + +1.1
5,049,693 + -0.4
5,049,693 + -0.0
5,049,693 + +0.0
5,049,693 + -1.3
5,049,693 + +0.3
5,049,693 + +1.0
5,049,694 - +0.1
5,049,694 - +0.3
5,049,694 - -0.7
5,049,694 - +0.4
5,049,697 + +0.3
5,049,698 - -0.2
5,049,698 - +0.2
5,049,784 + -2.2
5,049,784 + +0.5
5,049,812 - +0.3
5,049,812 - -1.0
5,049,812 - -0.4
5,049,812 - -1.2
5,049,812 - +0.3
5,049,812 - -0.3
5,049,937 + -0.6
5,049,938 - +1.0
5,049,938 - +0.6
5,049,958 + -1.5
5,049,959 - -0.3
5,049,976 - +0.2
5,049,990 - -2.3
5,050,021 + -0.3
5,050,021 + +0.9
5,050,022 - -1.0
5,050,022 - +0.3
5,050,028 - +1.0
5,050,040 - +1.4
5,050,059 + +0.2
5,050,060 - -0.2
5,050,060 - -0.8
5,050,153 + +0.2
5,050,153 + -0.2
5,050,153 + -0.1
5,050,153 + +1.5
5,050,154 - +1.1
5,050,159 + -0.4
5,050,241 + -0.4
5,050,242 - +0.8
5,050,321 + +1.9
5,050,322 - -0.9
5,050,378 + -0.7
5,050,398 - +1.5
5,050,398 - +0.7
5,050,409 + -0.6
5,050,416 - -0.6
5,050,416 - +0.5
5,050,421 + +0.6
5,050,505 - -0.6
5,050,505 - -0.3
5,050,505 - -0.0
5,050,549 + +0.8
5,050,549 + +0.1
5,050,549 + +1.1
5,050,549 + +0.4
5,050,550 - -0.8
5,050,550 - -0.0
5,050,550 - -0.5
5,050,577 + +0.6
5,050,577 + -0.1
5,050,578 - +0.6
5,050,579 + +0.2
5,050,579 + +0.6
5,050,580 - +0.9
5,050,645 - -0.3

Or see this region's nucleotide sequence