Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18270

Experiment: Carbon source Sucrose 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_18265 and AO356_18270 are separated by 216 nucleotidesAO356_18270 and AO356_18275 overlap by 4 nucleotides AO356_18265: AO356_18265 - isomerase, at 4,116,693 to 4,117,484 _18265 AO356_18270: AO356_18270 - iron ABC transporter ATP-binding protein, at 4,117,701 to 4,118,810 _18270 AO356_18275: AO356_18275 - ornithine carbamoyltransferase, at 4,118,807 to 4,119,727 _18275 Position (kb) 4117 4118 4119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4116.762 kb on + strandat 4116.763 kb on - strandat 4116.763 kb on - strandat 4116.763 kb on - strandat 4116.763 kb on - strandat 4116.818 kb on + strand, within AO356_18265at 4116.818 kb on + strand, within AO356_18265at 4116.818 kb on + strand, within AO356_18265at 4116.819 kb on - strand, within AO356_18265at 4116.902 kb on - strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.930 kb on + strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.931 kb on - strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.934 kb on + strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.935 kb on - strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.948 kb on + strand, within AO356_18265at 4116.949 kb on - strand, within AO356_18265at 4116.949 kb on - strand, within AO356_18265at 4117.327 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.366 kb on - strand, within AO356_18265at 4117.444 kb on + strandat 4117.444 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.553 kb on + strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.554 kb on - strandat 4117.651 kb on - strandat 4117.702 kb on + strandat 4117.702 kb on + strandat 4117.702 kb on + strandat 4117.702 kb on + strandat 4117.703 kb on - strandat 4117.717 kb on + strandat 4117.879 kb on - strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.891 kb on + strand, within AO356_18270at 4117.892 kb on - strand, within AO356_18270at 4117.892 kb on - strand, within AO356_18270at 4117.938 kb on - strand, within AO356_18270at 4117.938 kb on - strand, within AO356_18270at 4117.958 kb on - strand, within AO356_18270at 4117.958 kb on - strand, within AO356_18270at 4118.014 kb on + strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.015 kb on - strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.089 kb on + strand, within AO356_18270at 4118.090 kb on - strand, within AO356_18270at 4118.090 kb on - strand, within AO356_18270at 4118.137 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.146 kb on + strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.147 kb on - strand, within AO356_18270at 4118.539 kb on + strand, within AO356_18270at 4118.540 kb on - strand, within AO356_18270at 4118.540 kb on - strand, within AO356_18270at 4118.820 kb on + strandat 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.224 kb on + strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.225 kb on - strand, within AO356_18275at 4119.226 kb on + strand, within AO356_18275at 4119.226 kb on + strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.227 kb on - strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.228 kb on + strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.229 kb on - strand, within AO356_18275at 4119.415 kb on + strand, within AO356_18275at 4119.416 kb on - strand, within AO356_18275at 4119.623 kb on + strand, within AO356_18275at 4119.624 kb on - strand, within AO356_18275at 4119.624 kb on - strand, within AO356_18275at 4119.624 kb on - strand, within AO356_18275at 4119.635 kb on - strand, within AO356_18275at 4119.745 kb on + strandat 4119.746 kb on - strandat 4119.776 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM
remove
4,116,762 + +0.5
4,116,763 - -1.1
4,116,763 - +1.1
4,116,763 - -1.3
4,116,763 - -0.9
4,116,818 + AO356_18265 0.16 -0.2
4,116,818 + AO356_18265 0.16 +0.6
4,116,818 + AO356_18265 0.16 +0.7
4,116,819 - AO356_18265 0.16 -0.2
4,116,902 - AO356_18265 0.26 -0.2
4,116,930 + AO356_18265 0.30 +1.1
4,116,930 + AO356_18265 0.30 +0.1
4,116,930 + AO356_18265 0.30 -1.3
4,116,930 + AO356_18265 0.30 +0.5
4,116,930 + AO356_18265 0.30 -1.8
4,116,930 + AO356_18265 0.30 +0.8
4,116,930 + AO356_18265 0.30 -0.5
4,116,930 + AO356_18265 0.30 +0.5
4,116,930 + AO356_18265 0.30 -1.7
4,116,930 + AO356_18265 0.30 +0.4
4,116,930 + AO356_18265 0.30 -0.1
4,116,931 - AO356_18265 0.30 -1.9
4,116,931 - AO356_18265 0.30 -0.2
4,116,931 - AO356_18265 0.30 +0.7
4,116,931 - AO356_18265 0.30 +0.9
4,116,931 - AO356_18265 0.30 +0.2
4,116,931 - AO356_18265 0.30 +0.4
4,116,931 - AO356_18265 0.30 -0.6
4,116,931 - AO356_18265 0.30 +0.2
4,116,931 - AO356_18265 0.30 -0.8
4,116,931 - AO356_18265 0.30 -1.2
4,116,931 - AO356_18265 0.30 -0.0
4,116,931 - AO356_18265 0.30 -0.6
4,116,931 - AO356_18265 0.30 +0.2
4,116,931 - AO356_18265 0.30 -0.9
4,116,931 - AO356_18265 0.30 -0.1
4,116,931 - AO356_18265 0.30 +0.4
4,116,931 - AO356_18265 0.30 -0.3
4,116,931 - AO356_18265 0.30 +0.3
4,116,931 - AO356_18265 0.30 -1.8
4,116,931 - AO356_18265 0.30 -0.4
4,116,931 - AO356_18265 0.30 +0.4
4,116,934 + AO356_18265 0.30 -0.1
4,116,934 + AO356_18265 0.30 -1.5
4,116,934 + AO356_18265 0.30 -0.0
4,116,934 + AO356_18265 0.30 +0.9
4,116,934 + AO356_18265 0.30 +0.1
4,116,934 + AO356_18265 0.30 +1.5
4,116,934 + AO356_18265 0.30 +0.7
4,116,934 + AO356_18265 0.30 +0.7
4,116,934 + AO356_18265 0.30 -1.6
4,116,935 - AO356_18265 0.31 -1.2
4,116,935 - AO356_18265 0.31 +0.6
4,116,935 - AO356_18265 0.31 +0.2
4,116,935 - AO356_18265 0.31 +0.7
4,116,935 - AO356_18265 0.31 -0.6
4,116,935 - AO356_18265 0.31 +1.0
4,116,935 - AO356_18265 0.31 +0.5
4,116,935 - AO356_18265 0.31 -2.6
4,116,935 - AO356_18265 0.31 +1.2
4,116,948 + AO356_18265 0.32 -1.0
4,116,948 + AO356_18265 0.32 +0.6
4,116,948 + AO356_18265 0.32 +0.2
4,116,948 + AO356_18265 0.32 -0.2
4,116,949 - AO356_18265 0.32 -0.7
4,116,949 - AO356_18265 0.32 +1.2
4,117,327 - AO356_18265 0.80 -0.9
4,117,366 - AO356_18265 0.85 +1.7
4,117,366 - AO356_18265 0.85 -0.5
4,117,366 - AO356_18265 0.85 +0.3
4,117,366 - AO356_18265 0.85 -0.0
4,117,366 - AO356_18265 0.85 +0.7
4,117,366 - AO356_18265 0.85 +0.0
4,117,444 + -0.5
4,117,444 + +0.4
4,117,553 + +0.2
4,117,553 + +0.0
4,117,553 + +1.0
4,117,553 + -0.3
4,117,553 + -0.8
4,117,553 + +0.6
4,117,553 + -1.0
4,117,554 - +0.1
4,117,554 - -0.0
4,117,554 - +0.6
4,117,554 - +1.3
4,117,554 - +0.7
4,117,554 - -0.2
4,117,651 - +0.8
4,117,702 + +0.4
4,117,702 + +0.2
4,117,702 + -1.8
4,117,702 + +1.7
4,117,703 - +1.0
4,117,717 + +0.6
4,117,879 - AO356_18270 0.16 -0.4
4,117,891 + AO356_18270 0.17 -0.3
4,117,891 + AO356_18270 0.17 +1.2
4,117,891 + AO356_18270 0.17 -0.8
4,117,892 - AO356_18270 0.17 +1.3
4,117,892 - AO356_18270 0.17 -1.8
4,117,938 - AO356_18270 0.21 +0.2
4,117,938 - AO356_18270 0.21 +0.2
4,117,958 - AO356_18270 0.23 +0.5
4,117,958 - AO356_18270 0.23 -2.0
4,118,014 + AO356_18270 0.28 -0.0
4,118,015 - AO356_18270 0.28 -0.2
4,118,015 - AO356_18270 0.28 -0.3
4,118,015 - AO356_18270 0.28 +0.4
4,118,089 + AO356_18270 0.35 +0.6
4,118,089 + AO356_18270 0.35 +0.8
4,118,089 + AO356_18270 0.35 +0.2
4,118,089 + AO356_18270 0.35 -0.4
4,118,089 + AO356_18270 0.35 -0.3
4,118,090 - AO356_18270 0.35 -0.4
4,118,090 - AO356_18270 0.35 -1.9
4,118,137 + AO356_18270 0.39 +0.4
4,118,146 + AO356_18270 0.40 +0.8
4,118,146 + AO356_18270 0.40 +0.5
4,118,146 + AO356_18270 0.40 -0.9
4,118,146 + AO356_18270 0.40 +1.2
4,118,146 + AO356_18270 0.40 -0.1
4,118,147 - AO356_18270 0.40 -0.6
4,118,147 - AO356_18270 0.40 -1.6
4,118,147 - AO356_18270 0.40 +0.7
4,118,147 - AO356_18270 0.40 -0.3
4,118,147 - AO356_18270 0.40 -2.5
4,118,147 - AO356_18270 0.40 -0.8
4,118,539 + AO356_18270 0.75 +1.1
4,118,540 - AO356_18270 0.76 -0.3
4,118,540 - AO356_18270 0.76 +1.1
4,118,820 + +0.0
4,119,224 + AO356_18275 0.45 -1.9
4,119,224 + AO356_18275 0.45 -1.6
4,119,224 + AO356_18275 0.45 -1.9
4,119,224 + AO356_18275 0.45 -2.9
4,119,224 + AO356_18275 0.45 -2.3
4,119,224 + AO356_18275 0.45 -3.1
4,119,224 + AO356_18275 0.45 -2.0
4,119,224 + AO356_18275 0.45 -4.3
4,119,224 + AO356_18275 0.45 -3.4
4,119,224 + AO356_18275 0.45 -2.5
4,119,225 - AO356_18275 0.45 -2.2
4,119,225 - AO356_18275 0.45 -1.3
4,119,225 - AO356_18275 0.45 -3.6
4,119,225 - AO356_18275 0.45 -1.8
4,119,225 - AO356_18275 0.45 -2.6
4,119,225 - AO356_18275 0.45 -1.3
4,119,225 - AO356_18275 0.45 -1.6
4,119,225 - AO356_18275 0.45 -3.0
4,119,225 - AO356_18275 0.45 -1.9
4,119,226 + AO356_18275 0.45 -2.5
4,119,226 + AO356_18275 0.45 -2.4
4,119,227 - AO356_18275 0.46 -2.8
4,119,227 - AO356_18275 0.46 -4.0
4,119,227 - AO356_18275 0.46 -3.4
4,119,227 - AO356_18275 0.46 -1.5
4,119,227 - AO356_18275 0.46 -1.6
4,119,227 - AO356_18275 0.46 +0.1
4,119,228 + AO356_18275 0.46 -3.6
4,119,228 + AO356_18275 0.46 -3.3
4,119,228 + AO356_18275 0.46 -3.6
4,119,228 + AO356_18275 0.46 -1.6
4,119,228 + AO356_18275 0.46 -2.3
4,119,228 + AO356_18275 0.46 -3.5
4,119,228 + AO356_18275 0.46 -3.8
4,119,228 + AO356_18275 0.46 -1.9
4,119,229 - AO356_18275 0.46 -3.6
4,119,229 - AO356_18275 0.46 -2.3
4,119,229 - AO356_18275 0.46 -2.9
4,119,229 - AO356_18275 0.46 -3.0
4,119,229 - AO356_18275 0.46 -3.0
4,119,229 - AO356_18275 0.46 -2.1
4,119,229 - AO356_18275 0.46 -2.8
4,119,229 - AO356_18275 0.46 -2.5
4,119,229 - AO356_18275 0.46 -3.2
4,119,229 - AO356_18275 0.46 -1.8
4,119,415 + AO356_18275 0.66 -1.2
4,119,416 - AO356_18275 0.66 -2.4
4,119,623 + AO356_18275 0.89 -2.4
4,119,624 - AO356_18275 0.89 -4.0
4,119,624 - AO356_18275 0.89 -1.1
4,119,624 - AO356_18275 0.89 -3.1
4,119,635 - AO356_18275 0.90 -3.2
4,119,745 + -1.1
4,119,746 - +0.9
4,119,776 - -1.0

Or see this region's nucleotide sequence