Experiment: Carbon source Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09380 and AO356_09385 are separated by 10 nucleotides AO356_09385 and AO356_09390 are separated by 179 nucleotides AO356_09390 and AO356_09395 are separated by 4 nucleotides
AO356_09380: AO356_09380 - cell division protein, at 2,123,929 to 2,125,503
_09380
AO356_09385: AO356_09385 - 3-dehydroquinate synthase, at 2,125,514 to 2,126,614
_09385
AO356_09390: AO356_09390 - shikimate kinase, at 2,126,794 to 2,127,312
_09390
AO356_09395: AO356_09395 - fimbrial protein, at 2,127,317 to 2,129,404
_09395
Position (kb)
2125
2126
2127 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2124.589 kb on - strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.712 kb on + strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.713 kb on - strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.741 kb on + strand, within AO356_09380 at 2124.742 kb on - strand, within AO356_09380 at 2124.742 kb on - strand, within AO356_09380 at 2124.742 kb on - strand, within AO356_09380 at 2124.914 kb on + strand, within AO356_09380 at 2124.914 kb on + strand, within AO356_09380 at 2124.914 kb on + strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.915 kb on - strand, within AO356_09380 at 2124.938 kb on + strand, within AO356_09380 at 2124.939 kb on - strand, within AO356_09380 at 2125.121 kb on + strand, within AO356_09380 at 2125.121 kb on + strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.122 kb on - strand, within AO356_09380 at 2125.284 kb on + strand, within AO356_09380 at 2125.284 kb on + strand, within AO356_09380 at 2125.362 kb on - strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.497 kb on + strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.498 kb on - strand at 2125.512 kb on + strand at 2125.512 kb on + strand at 2125.512 kb on + strand at 2125.512 kb on + strand at 2125.513 kb on - strand at 2125.513 kb on - strand at 2125.513 kb on - strand at 2125.516 kb on - strand at 2125.522 kb on + strand at 2126.659 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2126.681 kb on - strand at 2127.426 kb on + strand at 2127.427 kb on - strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.454 kb on + strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.455 kb on - strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.458 kb on + strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.459 kb on - strand at 2127.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 5 mM remove 2,124,589 - AO356_09380 0.42 +1.3 2,124,712 + AO356_09380 0.50 +1.2 2,124,712 + AO356_09380 0.50 +0.8 2,124,712 + AO356_09380 0.50 +0.3 2,124,712 + AO356_09380 0.50 +0.9 2,124,712 + AO356_09380 0.50 +1.2 2,124,712 + AO356_09380 0.50 +1.0 2,124,713 - AO356_09380 0.50 +1.2 2,124,713 - AO356_09380 0.50 +0.1 2,124,713 - AO356_09380 0.50 +1.6 2,124,713 - AO356_09380 0.50 +0.9 2,124,713 - AO356_09380 0.50 +1.2 2,124,713 - AO356_09380 0.50 +1.6 2,124,741 + AO356_09380 0.52 +0.9 2,124,741 + AO356_09380 0.52 -0.3 2,124,741 + AO356_09380 0.52 +0.8 2,124,741 + AO356_09380 0.52 +0.8 2,124,741 + AO356_09380 0.52 +0.9 2,124,742 - AO356_09380 0.52 +0.5 2,124,742 - AO356_09380 0.52 +1.1 2,124,742 - AO356_09380 0.52 +1.3 2,124,914 + AO356_09380 0.63 +0.8 2,124,914 + AO356_09380 0.63 +0.8 2,124,914 + AO356_09380 0.63 +1.1 2,124,915 - AO356_09380 0.63 +1.2 2,124,915 - AO356_09380 0.63 -0.3 2,124,915 - AO356_09380 0.63 +1.7 2,124,915 - AO356_09380 0.63 +1.8 2,124,938 + AO356_09380 0.64 +0.7 2,124,939 - AO356_09380 0.64 +1.0 2,125,121 + AO356_09380 0.76 -1.5 2,125,121 + AO356_09380 0.76 +0.9 2,125,122 - AO356_09380 0.76 +1.0 2,125,122 - AO356_09380 0.76 -0.4 2,125,122 - AO356_09380 0.76 +0.9 2,125,122 - AO356_09380 0.76 +0.5 2,125,284 + AO356_09380 0.86 +1.3 2,125,284 + AO356_09380 0.86 +1.5 2,125,362 - -0.3 2,125,497 + +2.1 2,125,497 + -1.0 2,125,497 + +1.4 2,125,497 + +0.6 2,125,497 + -0.5 2,125,498 - +1.4 2,125,498 - -0.7 2,125,498 - +1.4 2,125,498 - +1.1 2,125,498 - +0.3 2,125,512 + +0.9 2,125,512 + +0.7 2,125,512 + +0.9 2,125,512 + -1.9 2,125,513 - +1.3 2,125,513 - +0.8 2,125,513 - +0.5 2,125,516 - +0.4 2,125,522 + -0.3 2,126,659 - -0.1 2,126,681 - -0.3 2,126,681 - +1.3 2,126,681 - +0.2 2,126,681 - +0.3 2,127,426 + -0.3 2,127,427 - +0.7 2,127,454 + -0.9 2,127,454 + -1.8 2,127,454 + -1.0 2,127,454 + -0.5 2,127,454 + -0.8 2,127,454 + -0.3 2,127,454 + -1.3 2,127,455 - -0.4 2,127,455 - +0.2 2,127,455 - -1.2 2,127,455 - -0.4 2,127,455 - +0.5 2,127,455 - -0.1 2,127,455 - -0.7 2,127,455 - -0.8 2,127,455 - +1.7 2,127,455 - -1.0 2,127,455 - +0.3 2,127,455 - -0.5 2,127,458 + +0.0 2,127,458 + +0.0 2,127,458 + -0.4 2,127,458 + -0.9 2,127,459 - +0.5 2,127,459 - +0.3 2,127,459 - -0.1 2,127,475 + -0.3
Or see this region's nucleotide sequence