Experiment: fumarate electron acceptor; flight
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2981 and SO2982 overlap by 10 nucleotides SO2982 and SO2983 overlap by 4 nucleotides SO2983 and SO2984 overlap by 17 nucleotides SO2984 and O overlap by 29 nucleotides
SO2981: SO2981 - hypothetical protein (NCBI ptt file), at 3,109,165 to 3,109,749
SO2981
SO2982: SO2982 - hypothetical protein (NCBI ptt file), at 3,109,740 to 3,110,255
SO2982
SO2983: SO2983 - hypothetical protein (NCBI ptt file), at 3,110,252 to 3,110,644
SO2983
SO2984: SO2984 - conserved hypothetical protein (NCBI ptt file), at 3,110,628 to 3,111,188
SO2984
SO2985: O - prophage LambdaSo, replication protein O (NCBI ptt file), at 3,111,160 to 3,112,176
O
Position (kb)
3110
3111 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3109.436 kb on + strand, within SO2981 at 3109.669 kb on + strand, within SO2981 at 3109.702 kb on - strand at 3109.750 kb on + strand at 3109.808 kb on + strand, within SO2982 at 3109.808 kb on + strand, within SO2982 at 3109.843 kb on + strand, within SO2982 at 3109.910 kb on - strand, within SO2982 at 3109.910 kb on - strand, within SO2982 at 3109.949 kb on - strand, within SO2982 at 3109.950 kb on - strand, within SO2982 at 3109.961 kb on + strand, within SO2982 at 3110.003 kb on + strand, within SO2982 at 3110.045 kb on - strand, within SO2982 at 3110.098 kb on + strand, within SO2982 at 3110.103 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.113 kb on + strand, within SO2982 at 3110.116 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.121 kb on - strand, within SO2982 at 3110.141 kb on + strand, within SO2982 at 3110.168 kb on - strand, within SO2982 at 3110.173 kb on + strand, within SO2982 at 3110.173 kb on + strand, within SO2982 at 3110.181 kb on - strand, within SO2982 at 3110.216 kb on - strand at 3110.273 kb on - strand at 3110.273 kb on - strand at 3110.332 kb on + strand, within SO2983 at 3110.340 kb on - strand, within SO2983 at 3110.387 kb on - strand, within SO2983 at 3110.468 kb on + strand, within SO2983 at 3110.475 kb on + strand, within SO2983 at 3110.483 kb on - strand, within SO2983 at 3110.574 kb on + strand, within SO2983 at 3110.859 kb on - strand, within SO2984 at 3110.882 kb on - strand, within SO2984 at 3110.961 kb on - strand, within SO2984 at 3110.972 kb on - strand, within SO2984 at 3110.983 kb on + strand, within SO2984 at 3110.983 kb on + strand, within SO2984 at 3110.985 kb on - strand, within SO2984 at 3111.242 kb on - strand at 3111.274 kb on + strand, within O at 3111.285 kb on + strand, within O at 3111.401 kb on - strand, within O at 3111.478 kb on + strand, within O at 3111.487 kb on + strand, within O at 3111.509 kb on - strand, within O at 3111.598 kb on - strand, within O at 3111.598 kb on - strand, within O at 3111.629 kb on + strand, within O
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor; flight remove 3,109,436 + SO2981 0.46 +0.9 3,109,669 + SO2981 0.86 +0.6 3,109,702 - +1.1 3,109,750 + -1.8 3,109,808 + SO2982 0.13 +0.3 3,109,808 + SO2982 0.13 +0.2 3,109,843 + SO2982 0.20 +0.2 3,109,910 - SO2982 0.33 +0.8 3,109,910 - SO2982 0.33 +0.9 3,109,949 - SO2982 0.41 +0.2 3,109,950 - SO2982 0.41 +1.5 3,109,961 + SO2982 0.43 +0.0 3,110,003 + SO2982 0.51 +0.3 3,110,045 - SO2982 0.59 +3.2 3,110,098 + SO2982 0.69 -0.3 3,110,103 + SO2982 0.70 +0.3 3,110,113 + SO2982 0.72 +0.5 3,110,113 + SO2982 0.72 +0.1 3,110,113 + SO2982 0.72 -1.0 3,110,113 + SO2982 0.72 -0.0 3,110,116 - SO2982 0.73 +1.0 3,110,121 - SO2982 0.74 +1.3 3,110,121 - SO2982 0.74 +0.8 3,110,121 - SO2982 0.74 +0.3 3,110,121 - SO2982 0.74 +0.1 3,110,121 - SO2982 0.74 +1.1 3,110,141 + SO2982 0.78 -0.5 3,110,168 - SO2982 0.83 +0.9 3,110,173 + SO2982 0.84 +0.3 3,110,173 + SO2982 0.84 +1.0 3,110,181 - SO2982 0.85 +2.1 3,110,216 - -1.5 3,110,273 - -1.7 3,110,273 - -0.7 3,110,332 + SO2983 0.20 +0.8 3,110,340 - SO2983 0.22 -1.7 3,110,387 - SO2983 0.34 +1.5 3,110,468 + SO2983 0.55 +0.2 3,110,475 + SO2983 0.57 -0.8 3,110,483 - SO2983 0.59 +1.2 3,110,574 + SO2983 0.82 -0.3 3,110,859 - SO2984 0.41 +1.1 3,110,882 - SO2984 0.45 +0.2 3,110,961 - SO2984 0.59 +1.2 3,110,972 - SO2984 0.61 +0.7 3,110,983 + SO2984 0.63 +3.0 3,110,983 + SO2984 0.63 +0.6 3,110,985 - SO2984 0.64 +0.6 3,111,242 - +0.7 3,111,274 + O SO2985 0.11 -0.8 3,111,285 + O SO2985 0.12 +1.4 3,111,401 - O SO2985 0.24 +1.6 3,111,478 + O SO2985 0.31 -0.9 3,111,487 + O SO2985 0.32 +0.2 3,111,509 - O SO2985 0.34 +0.2 3,111,598 - O SO2985 0.43 +0.6 3,111,598 - O SO2985 0.43 -0.0 3,111,629 + O SO2985 0.46 +0.4
Or see this region's nucleotide sequence