Strain Fitness in Shewanella oneidensis MR-1 around SO1832

Experiment: fumarate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1831 and ppiC-2 are separated by 154 nucleotidesppiC-2 and SO1833 are separated by 118 nucleotides SO1831: SO1831 - conserved hypothetical protein (NCBI ptt file), at 1,923,098 to 1,924,927 SO1831 SO1832: ppiC-2 - peptidyl-prolyl cis-trans isomerase C (NCBI ptt file), at 1,925,082 to 1,925,360 ppiC-2 SO1833: SO1833 - ISSod7, transposase (NCBI ptt file), at 1,925,479 to 1,926,801 SO1833 Position (kb) 1925 1926Strain fitness (log2 ratio) -1 0 1at 1924.232 kb on - strand, within SO1831at 1924.411 kb on + strand, within SO1831at 1924.480 kb on + strand, within SO1831at 1924.488 kb on - strand, within SO1831at 1924.507 kb on + strand, within SO1831at 1924.643 kb on + strand, within SO1831at 1924.828 kb on + strandat 1924.857 kb on + strandat 1924.886 kb on + strandat 1924.886 kb on + strandat 1924.888 kb on + strandat 1924.949 kb on + strandat 1924.967 kb on - strandat 1924.967 kb on - strandat 1925.054 kb on + strandat 1925.245 kb on + strand, within ppiC-2at 1925.245 kb on + strand, within ppiC-2

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor; flight
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1,924,232 - SO1831 0.62 -1.5
1,924,411 + SO1831 0.72 -0.1
1,924,480 + SO1831 0.76 +0.1
1,924,488 - SO1831 0.76 -0.1
1,924,507 + SO1831 0.77 +0.2
1,924,643 + SO1831 0.84 +0.3
1,924,828 + -0.4
1,924,857 + -0.5
1,924,886 + -0.8
1,924,886 + +0.7
1,924,888 + +0.7
1,924,949 + +0.3
1,924,967 - -0.2
1,924,967 - +0.3
1,925,054 + +0.9
1,925,245 + ppiC-2 SO1832 0.58 -1.2
1,925,245 + ppiC-2 SO1832 0.58 -1.2

Or see this region's nucleotide sequence