Strain Fitness in Shewanella oneidensis MR-1 around SO0904

Experiment: fumarate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnqrB-1 and nqrC-1 overlap by 11 nucleotidesnqrC-1 and nqrD-1 overlap by 4 nucleotidesnqrD-1 and nqrE-1 are separated by 9 nucleotides SO0903: nqrB-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file), at 930,300 to 931,532 nqrB-1 SO0904: nqrC-1 - NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file), at 931,522 to 932,316 nqrC-1 SO0905: nqrD-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file), at 932,313 to 932,933 nqrD-1 SO0906: nqrE-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file), at 932,943 to 933,551 nqrE-1 Position (kb) 931 932 933Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 930.558 kb on + strand, within nqrB-1at 930.568 kb on + strand, within nqrB-1at 930.591 kb on - strand, within nqrB-1at 930.593 kb on + strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.601 kb on - strand, within nqrB-1at 930.629 kb on - strand, within nqrB-1at 930.793 kb on - strand, within nqrB-1at 930.793 kb on - strand, within nqrB-1at 930.863 kb on - strand, within nqrB-1at 930.881 kb on + strand, within nqrB-1at 930.881 kb on - strand, within nqrB-1at 930.881 kb on - strand, within nqrB-1at 931.084 kb on + strand, within nqrB-1at 931.086 kb on - strand, within nqrB-1at 931.112 kb on - strand, within nqrB-1at 931.175 kb on - strand, within nqrB-1at 931.180 kb on - strand, within nqrB-1at 931.428 kb on + strandat 931.457 kb on + strandat 931.465 kb on - strandat 931.565 kb on + strandat 931.589 kb on + strandat 931.589 kb on + strandat 931.589 kb on + strandat 931.597 kb on - strandat 931.597 kb on - strandat 931.624 kb on - strand, within nqrC-1at 931.770 kb on - strand, within nqrC-1at 931.801 kb on - strand, within nqrC-1at 931.811 kb on - strand, within nqrC-1at 931.838 kb on + strand, within nqrC-1at 931.838 kb on - strand, within nqrC-1at 931.889 kb on + strand, within nqrC-1at 931.890 kb on + strand, within nqrC-1at 931.899 kb on - strand, within nqrC-1at 932.045 kb on - strand, within nqrC-1at 932.075 kb on + strand, within nqrC-1at 932.136 kb on + strand, within nqrC-1at 932.298 kb on + strandat 932.306 kb on - strandat 932.385 kb on + strand, within nqrD-1at 932.414 kb on + strand, within nqrD-1at 932.427 kb on - strand, within nqrD-1at 932.446 kb on + strand, within nqrD-1at 932.510 kb on + strand, within nqrD-1at 932.510 kb on + strand, within nqrD-1at 932.652 kb on + strand, within nqrD-1at 932.660 kb on - strand, within nqrD-1at 932.664 kb on + strand, within nqrD-1at 932.684 kb on + strand, within nqrD-1at 932.700 kb on + strand, within nqrD-1at 932.708 kb on - strand, within nqrD-1at 932.737 kb on + strand, within nqrD-1at 932.737 kb on + strand, within nqrD-1at 932.745 kb on - strand, within nqrD-1at 932.745 kb on - strand, within nqrD-1at 932.790 kb on - strand, within nqrD-1at 932.805 kb on - strand, within nqrD-1at 932.805 kb on - strand, within nqrD-1at 932.927 kb on + strandat 932.961 kb on - strandat 932.961 kb on - strandat 932.970 kb on - strandat 932.979 kb on + strandat 932.980 kb on - strandat 932.997 kb on - strandat 932.999 kb on + strandat 933.015 kb on + strand, within nqrE-1at 933.023 kb on - strand, within nqrE-1at 933.025 kb on + strand, within nqrE-1at 933.035 kb on + strand, within nqrE-1at 933.138 kb on - strand, within nqrE-1at 933.157 kb on - strand, within nqrE-1at 933.157 kb on - strand, within nqrE-1at 933.157 kb on - strand, within nqrE-1at 933.259 kb on + strand, within nqrE-1at 933.311 kb on - strand, within nqrE-1

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor; flight
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930,558 + nqrB-1 SO0903 0.21 -1.1
930,568 + nqrB-1 SO0903 0.22 -2.0
930,591 - nqrB-1 SO0903 0.24 +0.5
930,593 + nqrB-1 SO0903 0.24 +0.1
930,601 - nqrB-1 SO0903 0.24 -2.8
930,601 - nqrB-1 SO0903 0.24 -0.6
930,601 - nqrB-1 SO0903 0.24 -1.7
930,601 - nqrB-1 SO0903 0.24 -2.6
930,629 - nqrB-1 SO0903 0.27 -1.0
930,793 - nqrB-1 SO0903 0.40 -1.3
930,793 - nqrB-1 SO0903 0.40 -3.6
930,863 - nqrB-1 SO0903 0.46 +0.0
930,881 + nqrB-1 SO0903 0.47 +0.9
930,881 - nqrB-1 SO0903 0.47 -3.3
930,881 - nqrB-1 SO0903 0.47 -1.4
931,084 + nqrB-1 SO0903 0.64 -2.0
931,086 - nqrB-1 SO0903 0.64 -0.9
931,112 - nqrB-1 SO0903 0.66 +0.5
931,175 - nqrB-1 SO0903 0.71 -2.3
931,180 - nqrB-1 SO0903 0.71 -1.4
931,428 + -2.1
931,457 + -1.5
931,465 - -0.5
931,565 + -1.1
931,589 + -1.1
931,589 + -1.8
931,589 + +0.3
931,597 - -0.8
931,597 - -2.5
931,624 - nqrC-1 SO0904 0.13 -0.7
931,770 - nqrC-1 SO0904 0.31 -0.0
931,801 - nqrC-1 SO0904 0.35 -1.4
931,811 - nqrC-1 SO0904 0.36 -1.2
931,838 + nqrC-1 SO0904 0.40 -0.3
931,838 - nqrC-1 SO0904 0.40 -1.2
931,889 + nqrC-1 SO0904 0.46 +0.1
931,890 + nqrC-1 SO0904 0.46 -1.4
931,899 - nqrC-1 SO0904 0.47 +1.8
932,045 - nqrC-1 SO0904 0.66 -0.7
932,075 + nqrC-1 SO0904 0.70 -0.7
932,136 + nqrC-1 SO0904 0.77 -2.0
932,298 + +0.3
932,306 - -2.0
932,385 + nqrD-1 SO0905 0.12 -2.0
932,414 + nqrD-1 SO0905 0.16 -2.0
932,427 - nqrD-1 SO0905 0.18 -0.5
932,446 + nqrD-1 SO0905 0.21 -1.5
932,510 + nqrD-1 SO0905 0.32 -1.7
932,510 + nqrD-1 SO0905 0.32 -0.7
932,652 + nqrD-1 SO0905 0.55 -2.2
932,660 - nqrD-1 SO0905 0.56 -0.7
932,664 + nqrD-1 SO0905 0.57 -2.9
932,684 + nqrD-1 SO0905 0.60 -2.9
932,700 + nqrD-1 SO0905 0.62 +0.8
932,708 - nqrD-1 SO0905 0.64 -0.8
932,737 + nqrD-1 SO0905 0.68 -1.0
932,737 + nqrD-1 SO0905 0.68 -2.1
932,745 - nqrD-1 SO0905 0.70 -2.7
932,745 - nqrD-1 SO0905 0.70 -2.3
932,790 - nqrD-1 SO0905 0.77 -1.8
932,805 - nqrD-1 SO0905 0.79 -1.0
932,805 - nqrD-1 SO0905 0.79 -0.1
932,927 + -0.4
932,961 - -2.2
932,961 - +0.4
932,970 - -1.1
932,979 + -0.9
932,980 - -2.4
932,997 - -0.2
932,999 + -1.1
933,015 + nqrE-1 SO0906 0.12 -0.7
933,023 - nqrE-1 SO0906 0.13 -3.1
933,025 + nqrE-1 SO0906 0.13 -1.0
933,035 + nqrE-1 SO0906 0.15 -1.8
933,138 - nqrE-1 SO0906 0.32 -1.6
933,157 - nqrE-1 SO0906 0.35 -1.2
933,157 - nqrE-1 SO0906 0.35 -2.4
933,157 - nqrE-1 SO0906 0.35 -1.2
933,259 + nqrE-1 SO0906 0.52 -0.8
933,311 - nqrE-1 SO0906 0.60 -2.5

Or see this region's nucleotide sequence