Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27110 and BWI76_RS27115 overlap by 7 nucleotides BWI76_RS27115 and BWI76_RS27120 are separated by 159 nucleotides BWI76_RS27120 and BWI76_RS27125 are separated by 254 nucleotides
BWI76_RS27110: BWI76_RS27110 - xylulose 5-phosphate 3-epimerase, at 5,625,693 to 5,626,553
_RS27110
BWI76_RS27115: BWI76_RS27115 - L-ribulose-5-phosphate 4-epimerase, at 5,626,547 to 5,627,245
_RS27115
BWI76_RS27120: BWI76_RS27120 - AraC family transcriptional regulator, at 5,627,405 to 5,628,208
_RS27120
BWI76_RS27125: BWI76_RS27125 - sugar (glycoside-Pentoside-Hexuronide) transporter, at 5,628,463 to 5,629,863
_RS27125
Position (kb) 5627
5628
5629 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5626.508 kb on + strand at 5626.614 kb on + strand at 5626.614 kb on + strand at 5626.686 kb on + strand, within BWI76_RS27115 at 5626.686 kb on + strand, within BWI76_RS27115 at 5626.686 kb on + strand, within BWI76_RS27115 at 5626.693 kb on + strand, within BWI76_RS27115 at 5626.775 kb on - strand, within BWI76_RS27115 at 5626.891 kb on - strand, within BWI76_RS27115 at 5626.952 kb on - strand, within BWI76_RS27115 at 5626.980 kb on - strand, within BWI76_RS27115 at 5626.994 kb on + strand, within BWI76_RS27115 at 5627.016 kb on + strand, within BWI76_RS27115 at 5627.024 kb on - strand, within BWI76_RS27115 at 5627.024 kb on - strand, within BWI76_RS27115 at 5627.042 kb on + strand, within BWI76_RS27115 at 5627.064 kb on + strand, within BWI76_RS27115 at 5627.178 kb on + strand at 5627.179 kb on - strand at 5627.281 kb on + strand at 5627.292 kb on - strand at 5627.340 kb on + strand at 5627.348 kb on - strand at 5627.378 kb on - strand at 5627.410 kb on - strand at 5627.449 kb on - strand at 5627.579 kb on - strand, within BWI76_RS27120 at 5627.596 kb on - strand, within BWI76_RS27120 at 5627.657 kb on - strand, within BWI76_RS27120 at 5627.670 kb on - strand, within BWI76_RS27120 at 5627.682 kb on - strand, within BWI76_RS27120 at 5627.704 kb on + strand, within BWI76_RS27120 at 5627.722 kb on - strand, within BWI76_RS27120 at 5627.727 kb on + strand, within BWI76_RS27120 at 5627.727 kb on + strand, within BWI76_RS27120 at 5627.735 kb on - strand, within BWI76_RS27120 at 5627.735 kb on - strand, within BWI76_RS27120 at 5627.743 kb on + strand, within BWI76_RS27120 at 5627.744 kb on + strand, within BWI76_RS27120 at 5627.761 kb on - strand, within BWI76_RS27120 at 5627.762 kb on + strand, within BWI76_RS27120 at 5627.768 kb on - strand, within BWI76_RS27120 at 5627.772 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.814 kb on - strand, within BWI76_RS27120 at 5627.815 kb on - strand, within BWI76_RS27120 at 5627.815 kb on - strand, within BWI76_RS27120 at 5627.850 kb on + strand, within BWI76_RS27120 at 5627.876 kb on + strand, within BWI76_RS27120 at 5627.877 kb on - strand, within BWI76_RS27120 at 5627.890 kb on + strand, within BWI76_RS27120 at 5627.906 kb on - strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.913 kb on + strand, within BWI76_RS27120 at 5627.921 kb on - strand, within BWI76_RS27120 at 5627.921 kb on - strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.930 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on + strand, within BWI76_RS27120 at 5627.931 kb on - strand, within BWI76_RS27120 at 5627.931 kb on - strand at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.933 kb on - strand, within BWI76_RS27120 at 5627.935 kb on + strand, within BWI76_RS27120 at 5627.938 kb on - strand, within BWI76_RS27120 at 5627.938 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.943 kb on - strand, within BWI76_RS27120 at 5627.945 kb on - strand, within BWI76_RS27120 at 5627.945 kb on - strand, within BWI76_RS27120 at 5627.989 kb on + strand at 5627.997 kb on - strand, within BWI76_RS27120 at 5628.001 kb on + strand, within BWI76_RS27120 at 5628.001 kb on + strand, within BWI76_RS27120 at 5628.004 kb on - strand, within BWI76_RS27120 at 5628.004 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.009 kb on - strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.015 kb on + strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.023 kb on - strand, within BWI76_RS27120 at 5628.098 kb on + strand, within BWI76_RS27120 at 5628.098 kb on + strand, within BWI76_RS27120 at 5628.105 kb on + strand, within BWI76_RS27120 at 5628.110 kb on + strand, within BWI76_RS27120 at 5628.111 kb on + strand, within BWI76_RS27120 at 5628.116 kb on + strand, within BWI76_RS27120 at 5628.118 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.119 kb on - strand, within BWI76_RS27120 at 5628.130 kb on + strand at 5628.167 kb on + strand at 5628.167 kb on + strand at 5628.167 kb on + strand at 5628.175 kb on + strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.175 kb on - strand at 5628.179 kb on + strand at 5628.183 kb on - strand at 5628.245 kb on + strand at 5628.250 kb on + strand at 5628.277 kb on - strand at 5628.277 kb on - strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.315 kb on + strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.323 kb on - strand at 5628.369 kb on - strand at 5628.404 kb on + strand at 5628.406 kb on + strand at 5628.406 kb on + strand at 5628.406 kb on + strand at 5628.414 kb on - strand at 5628.429 kb on + strand at 5628.435 kb on - strand at 5628.442 kb on + strand at 5628.450 kb on - strand at 5628.480 kb on - strand at 5628.490 kb on - strand at 5628.491 kb on + strand at 5628.491 kb on + strand at 5628.497 kb on - strand at 5628.499 kb on + strand at 5628.499 kb on - strand at 5628.499 kb on - strand at 5628.504 kb on + strand at 5628.505 kb on + strand at 5628.505 kb on + strand at 5628.505 kb on + strand at 5628.513 kb on - strand at 5628.513 kb on - strand at 5628.513 kb on - strand at 5628.518 kb on + strand at 5628.539 kb on - strand at 5628.542 kb on + strand at 5628.566 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.571 kb on + strand at 5628.579 kb on - strand at 5628.579 kb on - strand at 5628.579 kb on - strand at 5628.585 kb on + strand at 5628.594 kb on - strand at 5628.613 kb on + strand, within BWI76_RS27125 at 5628.619 kb on + strand, within BWI76_RS27125 at 5628.640 kb on - strand, within BWI76_RS27125 at 5628.640 kb on - strand, within BWI76_RS27125 at 5628.654 kb on + strand, within BWI76_RS27125 at 5628.726 kb on - strand, within BWI76_RS27125 at 5628.726 kb on - strand, within BWI76_RS27125 at 5628.761 kb on - strand, within BWI76_RS27125 at 5628.784 kb on - strand, within BWI76_RS27125 at 5628.804 kb on + strand, within BWI76_RS27125 at 5628.903 kb on + strand, within BWI76_RS27125 at 5628.956 kb on + strand, within BWI76_RS27125 at 5628.964 kb on - strand, within BWI76_RS27125 at 5629.047 kb on - strand, within BWI76_RS27125 at 5629.063 kb on + strand, within BWI76_RS27125 at 5629.063 kb on + strand at 5629.068 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.148 kb on + strand, within BWI76_RS27125 at 5629.156 kb on - strand, within BWI76_RS27125 at 5629.169 kb on + strand, within BWI76_RS27125
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 5,626,508 + +0.4 5,626,614 + -0.6 5,626,614 + +1.1 5,626,686 + BWI76_RS27115 0.20 -0.0 5,626,686 + BWI76_RS27115 0.20 -0.0 5,626,686 + BWI76_RS27115 0.20 -2.0 5,626,693 + BWI76_RS27115 0.21 -0.7 5,626,775 - BWI76_RS27115 0.33 +0.1 5,626,891 - BWI76_RS27115 0.49 +0.3 5,626,952 - BWI76_RS27115 0.58 +0.1 5,626,980 - BWI76_RS27115 0.62 -0.1 5,626,994 + BWI76_RS27115 0.64 +0.7 5,627,016 + BWI76_RS27115 0.67 +0.9 5,627,024 - BWI76_RS27115 0.68 +0.3 5,627,024 - BWI76_RS27115 0.68 +0.2 5,627,042 + BWI76_RS27115 0.71 +0.3 5,627,064 + BWI76_RS27115 0.74 +0.4 5,627,178 + +0.5 5,627,179 - +0.4 5,627,281 + -0.2 5,627,292 - +0.3 5,627,340 + +2.0 5,627,348 - +1.3 5,627,378 - +0.0 5,627,410 - -0.3 5,627,449 - -0.3 5,627,579 - BWI76_RS27120 0.22 -1.5 5,627,596 - BWI76_RS27120 0.24 +0.3 5,627,657 - BWI76_RS27120 0.31 -0.0 5,627,670 - BWI76_RS27120 0.33 -2.8 5,627,682 - BWI76_RS27120 0.34 -0.3 5,627,704 + BWI76_RS27120 0.37 -0.6 5,627,722 - BWI76_RS27120 0.39 -0.5 5,627,727 + BWI76_RS27120 0.40 -1.5 5,627,727 + BWI76_RS27120 0.40 -2.6 5,627,735 - BWI76_RS27120 0.41 +0.4 5,627,735 - BWI76_RS27120 0.41 -1.5 5,627,743 + BWI76_RS27120 0.42 +0.1 5,627,744 + BWI76_RS27120 0.42 +1.0 5,627,761 - BWI76_RS27120 0.44 -0.9 5,627,762 + BWI76_RS27120 0.44 -0.7 5,627,768 - BWI76_RS27120 0.45 -0.8 5,627,772 - BWI76_RS27120 0.46 -0.0 5,627,814 - BWI76_RS27120 0.51 -2.2 5,627,814 - BWI76_RS27120 0.51 +1.1 5,627,814 - BWI76_RS27120 0.51 +1.3 5,627,815 - BWI76_RS27120 0.51 -2.5 5,627,815 - BWI76_RS27120 0.51 +1.0 5,627,850 + BWI76_RS27120 0.55 +1.0 5,627,876 + BWI76_RS27120 0.59 +0.3 5,627,877 - BWI76_RS27120 0.59 -1.0 5,627,890 + BWI76_RS27120 0.60 +0.4 5,627,906 - BWI76_RS27120 0.62 -1.6 5,627,913 + BWI76_RS27120 0.63 -0.1 5,627,913 + +1.0 5,627,913 + BWI76_RS27120 0.63 +1.0 5,627,913 + BWI76_RS27120 0.63 -0.6 5,627,913 + BWI76_RS27120 0.63 -1.2 5,627,921 - BWI76_RS27120 0.64 +2.0 5,627,921 - BWI76_RS27120 0.64 +0.7 5,627,930 + BWI76_RS27120 0.65 -0.5 5,627,930 + BWI76_RS27120 0.65 -0.6 5,627,930 + BWI76_RS27120 0.65 +0.1 5,627,931 + BWI76_RS27120 0.65 -0.3 5,627,931 + BWI76_RS27120 0.65 -3.0 5,627,931 + BWI76_RS27120 0.65 -2.7 5,627,931 - BWI76_RS27120 0.65 -0.0 5,627,931 - +1.6 5,627,933 - BWI76_RS27120 0.66 -0.5 5,627,933 - BWI76_RS27120 0.66 -3.0 5,627,933 - BWI76_RS27120 0.66 -0.3 5,627,933 - BWI76_RS27120 0.66 -1.1 5,627,935 + BWI76_RS27120 0.66 -0.9 5,627,938 - BWI76_RS27120 0.66 +0.3 5,627,938 - BWI76_RS27120 0.66 -0.4 5,627,943 - BWI76_RS27120 0.67 -0.2 5,627,943 - BWI76_RS27120 0.67 -0.3 5,627,943 - BWI76_RS27120 0.67 +0.3 5,627,945 - BWI76_RS27120 0.67 -0.5 5,627,945 - BWI76_RS27120 0.67 +1.5 5,627,989 + -0.0 5,627,997 - BWI76_RS27120 0.74 +1.7 5,628,001 + BWI76_RS27120 0.74 +0.2 5,628,001 + BWI76_RS27120 0.74 -1.4 5,628,004 - BWI76_RS27120 0.75 -0.8 5,628,004 - BWI76_RS27120 0.75 -0.4 5,628,009 - BWI76_RS27120 0.75 +0.4 5,628,009 - BWI76_RS27120 0.75 -1.3 5,628,009 - BWI76_RS27120 0.75 -0.1 5,628,015 + BWI76_RS27120 0.76 -0.7 5,628,015 + BWI76_RS27120 0.76 -1.4 5,628,015 + BWI76_RS27120 0.76 +0.2 5,628,015 + BWI76_RS27120 0.76 +1.0 5,628,015 + BWI76_RS27120 0.76 +0.2 5,628,015 + BWI76_RS27120 0.76 -0.9 5,628,015 + BWI76_RS27120 0.76 -0.2 5,628,015 + BWI76_RS27120 0.76 -2.2 5,628,015 + BWI76_RS27120 0.76 +1.0 5,628,015 + BWI76_RS27120 0.76 -0.4 5,628,015 + BWI76_RS27120 0.76 +0.8 5,628,015 + BWI76_RS27120 0.76 -0.2 5,628,023 - BWI76_RS27120 0.77 -0.6 5,628,023 - BWI76_RS27120 0.77 +0.7 5,628,023 - BWI76_RS27120 0.77 -0.0 5,628,023 - BWI76_RS27120 0.77 +0.1 5,628,023 - BWI76_RS27120 0.77 +0.3 5,628,023 - BWI76_RS27120 0.77 +1.5 5,628,023 - BWI76_RS27120 0.77 +1.0 5,628,098 + BWI76_RS27120 0.86 +0.2 5,628,098 + BWI76_RS27120 0.86 -4.7 5,628,105 + BWI76_RS27120 0.87 -0.0 5,628,110 + BWI76_RS27120 0.88 +1.6 5,628,111 + BWI76_RS27120 0.88 -0.0 5,628,116 + BWI76_RS27120 0.88 -1.3 5,628,118 - BWI76_RS27120 0.89 +1.6 5,628,119 - BWI76_RS27120 0.89 -0.6 5,628,119 - BWI76_RS27120 0.89 -2.4 5,628,119 - BWI76_RS27120 0.89 -1.8 5,628,119 - BWI76_RS27120 0.89 -3.5 5,628,119 - BWI76_RS27120 0.89 -1.6 5,628,130 + -0.8 5,628,167 + -1.0 5,628,167 + +2.6 5,628,167 + -1.4 5,628,175 + -0.4 5,628,175 - +0.4 5,628,175 - -1.2 5,628,175 - -0.7 5,628,175 - -1.2 5,628,179 + -0.2 5,628,183 - -0.8 5,628,245 + +1.0 5,628,250 + +1.4 5,628,277 - -0.2 5,628,277 - -3.7 5,628,315 + +0.6 5,628,315 + -2.4 5,628,315 + -1.1 5,628,315 + -1.3 5,628,315 + +1.3 5,628,323 - -0.2 5,628,323 - -1.3 5,628,323 - +0.7 5,628,323 - -2.5 5,628,323 - +1.0 5,628,323 - -3.1 5,628,369 - -3.9 5,628,404 + -1.6 5,628,406 + -0.2 5,628,406 + -1.6 5,628,406 + -0.1 5,628,414 - -0.1 5,628,429 + +1.4 5,628,435 - -0.8 5,628,442 + -0.2 5,628,450 - -0.3 5,628,480 - +1.0 5,628,490 - -1.3 5,628,491 + -1.4 5,628,491 + -0.4 5,628,497 - +0.1 5,628,499 + -0.2 5,628,499 - +1.0 5,628,499 - -1.6 5,628,504 + -0.6 5,628,505 + +0.2 5,628,505 + +1.3 5,628,505 + -0.5 5,628,513 - +1.1 5,628,513 - -1.0 5,628,513 - -0.0 5,628,518 + -2.0 5,628,539 - -0.7 5,628,542 + -0.6 5,628,566 + +0.4 5,628,571 + -2.0 5,628,571 + +1.0 5,628,571 + -0.0 5,628,571 + +0.6 5,628,571 + +0.1 5,628,579 - +0.6 5,628,579 - +0.3 5,628,579 - +0.7 5,628,585 + -0.0 5,628,594 - +2.4 5,628,613 + BWI76_RS27125 0.11 -0.9 5,628,619 + BWI76_RS27125 0.11 +0.8 5,628,640 - BWI76_RS27125 0.13 -1.2 5,628,640 - BWI76_RS27125 0.13 +1.0 5,628,654 + BWI76_RS27125 0.14 -1.9 5,628,726 - BWI76_RS27125 0.19 +1.0 5,628,726 - BWI76_RS27125 0.19 -1.8 5,628,761 - BWI76_RS27125 0.21 +0.6 5,628,784 - BWI76_RS27125 0.23 +0.1 5,628,804 + BWI76_RS27125 0.24 +0.4 5,628,903 + BWI76_RS27125 0.31 +0.2 5,628,956 + BWI76_RS27125 0.35 -0.4 5,628,964 - BWI76_RS27125 0.36 -0.4 5,629,047 - BWI76_RS27125 0.42 +0.2 5,629,063 + BWI76_RS27125 0.43 -1.6 5,629,063 + +1.0 5,629,068 + BWI76_RS27125 0.43 -0.5 5,629,148 + BWI76_RS27125 0.49 -2.5 5,629,148 + BWI76_RS27125 0.49 -1.3 5,629,148 + BWI76_RS27125 0.49 +1.0 5,629,148 + BWI76_RS27125 0.49 -0.1 5,629,148 + BWI76_RS27125 0.49 -3.2 5,629,156 - BWI76_RS27125 0.49 +0.2 5,629,169 + BWI76_RS27125 0.50 +0.5
Or see this region's nucleotide sequence