Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19220 and BWI76_RS19225 are separated by 14 nucleotides BWI76_RS19225 and BWI76_RS19230 are separated by 0 nucleotides BWI76_RS19230 and BWI76_RS19235 overlap by 4 nucleotides
BWI76_RS19220: BWI76_RS19220 - hypothetical protein, at 4,000,083 to 4,001,201
_RS19220
BWI76_RS19225: BWI76_RS19225 - AsnC family transcriptional regulator, at 4,001,216 to 4,001,671
_RS19225
BWI76_RS19230: BWI76_RS19230 - polar amino acid ABC transporter inner membrane subunit, at 4,001,672 to 4,002,397
_RS19230
BWI76_RS19235: BWI76_RS19235 - polar amino acid ABC transporter inner membrane subunit, at 4,002,394 to 4,003,086
_RS19235
Position (kb) 4001
4002 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4000.261 kb on + strand, within BWI76_RS19220 at 4000.475 kb on + strand, within BWI76_RS19220 at 4000.475 kb on + strand, within BWI76_RS19220 at 4000.760 kb on - strand, within BWI76_RS19220 at 4000.969 kb on + strand, within BWI76_RS19220 at 4001.044 kb on + strand, within BWI76_RS19220 at 4001.319 kb on - strand, within BWI76_RS19225 at 4001.345 kb on - strand, within BWI76_RS19225 at 4001.401 kb on + strand, within BWI76_RS19225 at 4001.570 kb on + strand, within BWI76_RS19225 at 4001.596 kb on - strand, within BWI76_RS19225 at 4001.845 kb on - strand at 4001.930 kb on - strand, within BWI76_RS19230 at 4002.240 kb on + strand, within BWI76_RS19230 at 4002.248 kb on - strand, within BWI76_RS19230 at 4002.408 kb on - strand at 4002.436 kb on - strand at 4002.533 kb on + strand, within BWI76_RS19235 at 4002.556 kb on + strand, within BWI76_RS19235 at 4002.588 kb on + strand, within BWI76_RS19235 at 4002.643 kb on + strand, within BWI76_RS19235
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 4,000,261 + BWI76_RS19220 0.16 +0.2 4,000,475 + BWI76_RS19220 0.35 +0.1 4,000,475 + BWI76_RS19220 0.35 -2.0 4,000,760 - BWI76_RS19220 0.61 -0.0 4,000,969 + BWI76_RS19220 0.79 +0.9 4,001,044 + BWI76_RS19220 0.86 +0.1 4,001,319 - BWI76_RS19225 0.23 +0.0 4,001,345 - BWI76_RS19225 0.28 +0.1 4,001,401 + BWI76_RS19225 0.41 -1.1 4,001,570 + BWI76_RS19225 0.78 +0.1 4,001,596 - BWI76_RS19225 0.83 +0.2 4,001,845 - +1.0 4,001,930 - BWI76_RS19230 0.36 +0.7 4,002,240 + BWI76_RS19230 0.78 +1.5 4,002,248 - BWI76_RS19230 0.79 +0.2 4,002,408 - +0.9 4,002,436 - +0.6 4,002,533 + BWI76_RS19235 0.20 +2.0 4,002,556 + BWI76_RS19235 0.23 +0.2 4,002,588 + BWI76_RS19235 0.28 +1.1 4,002,643 + BWI76_RS19235 0.36 +1.0
Or see this region's nucleotide sequence