Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19195 and BWI76_RS19200 overlap by 4 nucleotides BWI76_RS19200 and BWI76_RS19205 overlap by 1 nucleotides BWI76_RS19205 and BWI76_RS19210 are separated by 201 nucleotides
BWI76_RS19195: BWI76_RS19195 - nickel ABC transporter permease, at 3,995,460 to 3,996,306
_RS19195
BWI76_RS19200: BWI76_RS19200 - binding-protein-dependent transport system inner membrane protein, at 3,996,303 to 3,997,241
_RS19200
BWI76_RS19205: BWI76_RS19205 - putative proline iminopeptidase, at 3,997,241 to 3,998,140
_RS19205
BWI76_RS19210: BWI76_RS19210 - LuxR family transcriptional regulator, at 3,998,342 to 3,999,094
_RS19210
Position (kb) 3997
3998
3999 Strain fitness (log2 ratio) -1
0
1 at 3996.374 kb on + strand at 3996.433 kb on + strand, within BWI76_RS19200 at 3996.586 kb on + strand, within BWI76_RS19200 at 3996.654 kb on + strand, within BWI76_RS19200 at 3996.968 kb on + strand, within BWI76_RS19200 at 3997.091 kb on - strand, within BWI76_RS19200 at 3997.807 kb on + strand, within BWI76_RS19205 at 3997.906 kb on + strand, within BWI76_RS19205 at 3997.948 kb on + strand, within BWI76_RS19205 at 3998.075 kb on + strand at 3998.542 kb on + strand, within BWI76_RS19210 at 3998.740 kb on + strand, within BWI76_RS19210 at 3998.879 kb on + strand, within BWI76_RS19210 at 3999.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 3,996,374 + +0.0 3,996,433 + BWI76_RS19200 0.14 -1.2 3,996,586 + BWI76_RS19200 0.30 -0.4 3,996,654 + BWI76_RS19200 0.37 -1.1 3,996,968 + BWI76_RS19200 0.71 -1.4 3,997,091 - BWI76_RS19200 0.84 -1.4 3,997,807 + BWI76_RS19205 0.63 +0.5 3,997,906 + BWI76_RS19205 0.74 -0.2 3,997,948 + BWI76_RS19205 0.79 +0.4 3,998,075 + +0.1 3,998,542 + BWI76_RS19210 0.27 -0.0 3,998,740 + BWI76_RS19210 0.53 +0.5 3,998,879 + BWI76_RS19210 0.71 +0.2 3,999,134 + +0.2
Or see this region's nucleotide sequence