Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16895

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16885 and BWI76_RS16890 are separated by 33 nucleotidesBWI76_RS16890 and BWI76_RS16895 are separated by 169 nucleotidesBWI76_RS16895 and BWI76_RS16900 are separated by 74 nucleotides BWI76_RS16885: BWI76_RS16885 - hypothetical protein, at 3,502,205 to 3,502,389 _RS16885 BWI76_RS16890: BWI76_RS16890 - hypothetical protein, at 3,502,423 to 3,503,157 _RS16890 BWI76_RS16895: BWI76_RS16895 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 3,503,327 to 3,504,523 _RS16895 BWI76_RS16900: BWI76_RS16900 - 4-hydroxy-2-oxovalerate aldolase, at 3,504,598 to 3,505,614 _RS16900 Position (kb) 3503 3504 3505Strain fitness (log2 ratio) -3 -2 -1 0 1at 3502.434 kb on + strandat 3502.831 kb on - strand, within BWI76_RS16890at 3504.087 kb on + strand, within BWI76_RS16895at 3504.221 kb on + strand, within BWI76_RS16895at 3504.460 kb on + strandat 3504.836 kb on + strand, within BWI76_RS16900at 3505.512 kb on - strand, within BWI76_RS16900

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
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3,502,434 + -0.9
3,502,831 - BWI76_RS16890 0.56 +1.3
3,504,087 + BWI76_RS16895 0.63 -1.2
3,504,221 + BWI76_RS16895 0.75 -3.1
3,504,460 + -1.8
3,504,836 + BWI76_RS16900 0.23 +1.2
3,505,512 - BWI76_RS16900 0.90 -0.3

Or see this region's nucleotide sequence