Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06255

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
1,314,354	+		BWI76_RS06250	0.67	-1.0
1,314,639	-		BWI76_RS06250	0.83	+0.2
1,314,924	-				+0.8
1,314,946	+				-1.0
1,314,954	-				+0.9
1,315,004	-				-0.2
1,315,134	+		BWI76_RS06255	0.21	-1.4
1,315,461	-		BWI76_RS06255	0.57	-0.1
1,315,462	-		BWI76_RS06255	0.58	-0.4
1,315,477	-		BWI76_RS06255	0.59	-0.0
1,315,569	+		BWI76_RS06255	0.69	-1.7
1,315,708	-		BWI76_RS06255	0.85	+0.4
1,315,710	-		BWI76_RS06255	0.85	+0.2
1,315,735	+		BWI76_RS06255	0.88	-0.5
1,315,748	-		BWI76_RS06255	0.89	-1.6
1,315,753	-		BWI76_RS06255	0.90	-2.5
1,315,824	+				+0.4
1,315,825	+				+0.2
1,315,825	+				+0.6
1,315,826	+				-1.1
1,315,826	+				+0.7
1,315,826	+				+0.4
1,315,826	+				+1.0
1,315,826	+				-1.5
1,315,826	+				-1.5
1,315,831	+				-3.4
1,315,833	+				+1.0
1,315,833	-				+0.2
1,315,833	-				-1.0
1,315,834	-				+0.1
1,315,834	-				+0.2
1,315,834	-				+0.1
1,315,834	-				-1.3
1,315,834	-				+0.3
1,315,834	-				+1.2
1,315,841	-				-0.0
1,315,841	-				-1.2
1,315,841	-				-1.0
1,315,841	-				+0.1
1,315,841	-				+0.8
1,315,847	+				-0.4
1,315,870	+				-0.8
1,315,871	-				-0.0
1,315,878	-				+0.5
1,315,894	+				-1.0
1,315,894	+				-1.0
1,315,894	+				+1.8
1,315,894	+				+0.2
1,315,894	+				-1.0
1,315,894	+				-0.0
1,315,894	+				+1.2
1,315,894	+				+2.3
1,315,902	-				-1.8
1,315,902	-				+0.2
1,315,902	-				-1.6
1,315,902	-				+1.3
1,315,902	-				+0.5
1,315,902	-				-1.0
1,315,902	-				+0.4
1,315,902	-				+0.4
1,315,902	-				-0.6
1,315,902	-				-1.1
1,315,902	-				-3.2
1,315,902	-				+0.9
1,315,902	-				-0.2
1,315,902	-				-1.6
1,316,049	+				-2.9
1,316,049	+				-0.3
1,316,049	+				-0.4
1,316,051	+				-0.6
1,316,061	-				+0.6
1,316,062	-				-1.9
1,316,073	+				+0.1
1,316,074	+				-0.9
1,316,074	+				-1.8
1,316,074	+				-0.2
1,316,074	+				+0.1
1,316,074	+				-0.4
1,316,074	+				+1.0
1,316,074	+				-1.0
1,316,074	+				-1.0
1,316,074	+				-0.0
1,316,074	+				+0.7
1,316,074	+				-0.1
1,316,074	+				-1.0
1,316,074	+				-0.5
1,316,074	+				-0.6
1,316,074	+				-2.2
1,316,074	+				+0.5
1,316,074	+				+1.3
1,316,074	+				+1.0
1,316,074	+				+0.4
1,316,074	+				+0.9
1,316,074	+				-0.6
1,316,074	+				-0.5
1,316,081	-				+0.2
1,316,082	-				+0.7
1,316,082	-				-0.9
1,316,082	-				-0.7
1,316,082	-				+0.1
1,316,082	-				-0.9
1,316,082	-				+1.2
1,316,082	-				-0.4
1,316,082	-				-0.6
1,316,082	-				-1.5
1,316,082	-				+0.2
1,316,082	-				+3.3
1,316,082	-				-0.7
1,316,082	-				+0.7
1,316,082	-				+0.4
1,316,082	-				-2.5
1,316,082	-				-1.4
1,316,082	-				-0.6
1,316,082	-				+0.2
1,316,082	-				-0.8
1,316,082	-				+0.1
1,316,084	+				-0.3
1,316,084	+				-1.0
1,316,084	+				-1.2
1,316,084	+				+0.0
1,316,084	+				-0.1
1,316,084	+				+0.2
1,316,084	+				+0.2
1,316,087	+				-0.0
1,316,092	-				+0.1
1,316,092	-				-0.3
1,316,092	-				-0.0
1,316,092	-				-0.6
1,316,092	-				+0.5
1,316,092	-				+0.7
1,316,104	-				+1.0
1,316,104	-				-1.0
1,316,135	-				-1.6
1,316,135	-				-2.2
1,316,151	+				-1.1
1,316,161	-				-1.8
1,316,206	+		BWI76_RS06260	0.11	-0.5
1,316,255	+		BWI76_RS06260	0.19	+0.2
1,316,256	+		BWI76_RS06260	0.19	-0.2
1,316,256	+		BWI76_RS06260	0.19	-0.4
1,316,256	+		BWI76_RS06260	0.19	-3.2
1,316,256	+		BWI76_RS06260	0.19	-0.8
1,316,264	-		BWI76_RS06260	0.20	+0.6
1,316,284	-		BWI76_RS06260	0.23	-0.7
1,316,295	+		BWI76_RS06260	0.25	-1.0
1,316,303	-		BWI76_RS06260	0.26	-1.6
1,316,303	-		BWI76_RS06260	0.26	+1.0
1,316,303	-				+1.0
1,316,320	+		BWI76_RS06260	0.29	+0.3
1,316,328	+		BWI76_RS06260	0.30	-0.3
1,316,328	+		BWI76_RS06260	0.30	+0.4
1,316,328	+		BWI76_RS06260	0.30	-0.3
1,316,328	+		BWI76_RS06260	0.30	+0.0
1,316,329	+		BWI76_RS06260	0.30	-0.1
1,316,329	+		BWI76_RS06260	0.30	+0.4
1,316,329	+		BWI76_RS06260	0.30	+1.6
1,316,336	-		BWI76_RS06260	0.31	-1.6
1,316,336	-				-1.6
1,316,336	-		BWI76_RS06260	0.31	+1.8
1,316,336	-		BWI76_RS06260	0.31	+0.7
1,316,336	-		BWI76_RS06260	0.31	-3.0
1,316,336	-		BWI76_RS06260	0.31	-0.0
1,316,336	-		BWI76_RS06260	0.31	+0.0
1,316,337	-		BWI76_RS06260	0.31	+0.8
1,316,338	+		BWI76_RS06260	0.31	-1.6
1,316,338	+		BWI76_RS06260	0.31	+1.0
1,316,343	+		BWI76_RS06260	0.32	+0.6
1,316,346	-		BWI76_RS06260	0.33	-1.7
1,316,351	-		BWI76_RS06260	0.33	-0.0
1,316,354	+		BWI76_RS06260	0.34	-1.4
1,316,360	-		BWI76_RS06260	0.35	-1.6
1,316,363	-		BWI76_RS06260	0.35	-2.0
1,316,372	-		BWI76_RS06260	0.37	+0.1
1,316,374	+		BWI76_RS06260	0.37	+0.5
1,316,374	+		BWI76_RS06260	0.37	+0.4
1,316,375	+		BWI76_RS06260	0.37	+0.6
1,316,375	-		BWI76_RS06260	0.37	+1.2
1,316,382	-		BWI76_RS06260	0.38	+1.4
1,316,393	-		BWI76_RS06260	0.40	+1.4
1,316,395	+		BWI76_RS06260	0.40	-0.4
1,316,396	+		BWI76_RS06260	0.40	+0.1
1,316,398	+		BWI76_RS06260	0.41	-3.0
1,316,398	+		BWI76_RS06260	0.41	+0.2
1,316,398	+		BWI76_RS06260	0.41	+0.2
1,316,398	+		BWI76_RS06260	0.41	-3.4
1,316,398	+		BWI76_RS06260	0.41	-0.5
1,316,398	+		BWI76_RS06260	0.41	+1.0
1,316,404	-		BWI76_RS06260	0.42	+0.2
1,316,404	-		BWI76_RS06260	0.42	-1.5
1,316,404	-		BWI76_RS06260	0.42	-0.0
1,316,406	-		BWI76_RS06260	0.42	-0.0
1,316,406	-		BWI76_RS06260	0.42	+0.6
1,316,406	-		BWI76_RS06260	0.42	-1.8
1,316,406	-		BWI76_RS06260	0.42	+0.7
1,316,406	-		BWI76_RS06260	0.42	+0.1
1,316,406	-		BWI76_RS06260	0.42	-0.4
1,316,468	+		BWI76_RS06260	0.52	+0.3
1,316,476	-		BWI76_RS06260	0.53	-2.5
1,316,481	+		BWI76_RS06260	0.54	-0.0
1,316,489	-		BWI76_RS06260	0.55	-1.0
1,316,489	-		BWI76_RS06260	0.55	+0.4
1,316,525	+		BWI76_RS06260	0.61	-1.3
1,316,553	-		BWI76_RS06260	0.65	+1.1
1,316,737	-				-2.2
1,316,833	-				-0.6