Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04430

Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04420 and BWI76_RS04425 are separated by 15 nucleotidesBWI76_RS04425 and BWI76_RS04430 are separated by 160 nucleotidesBWI76_RS04430 and BWI76_RS04435 are separated by 278 nucleotides BWI76_RS04420: BWI76_RS04420 - oxaloacetate decarboxylase, at 912,522 to 914,288 _RS04420 BWI76_RS04425: BWI76_RS04425 - oxaloacetate decarboxylase subunit gamma, at 914,304 to 914,555 _RS04425 BWI76_RS04430: BWI76_RS04430 - citrate carrier protein, at 914,716 to 916,056 _RS04430 BWI76_RS04435: BWI76_RS04435 - [citrate (pro-3S)-lyase] ligase, at 916,335 to 917,363 _RS04435 Position (kb) 914 915 916 917Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 913.825 kb on - strand, within BWI76_RS04420at 913.835 kb on - strand, within BWI76_RS04420at 913.863 kb on - strand, within BWI76_RS04420at 914.101 kb on + strandat 914.511 kb on + strand, within BWI76_RS04425at 914.540 kb on - strandat 914.630 kb on - strandat 914.820 kb on - strandat 914.820 kb on - strandat 914.836 kb on - strandat 914.861 kb on + strand, within BWI76_RS04430at 914.866 kb on - strand, within BWI76_RS04430at 914.868 kb on + strand, within BWI76_RS04430at 915.014 kb on - strand, within BWI76_RS04430at 915.019 kb on - strand, within BWI76_RS04430at 915.121 kb on + strand, within BWI76_RS04430at 915.129 kb on - strand, within BWI76_RS04430at 915.136 kb on + strand, within BWI76_RS04430at 915.214 kb on - strand, within BWI76_RS04430at 915.244 kb on + strandat 915.324 kb on + strand, within BWI76_RS04430at 915.342 kb on - strand, within BWI76_RS04430at 915.389 kb on + strand, within BWI76_RS04430at 915.397 kb on - strand, within BWI76_RS04430at 915.400 kb on + strand, within BWI76_RS04430at 915.406 kb on + strand, within BWI76_RS04430at 915.411 kb on + strandat 915.423 kb on + strand, within BWI76_RS04430at 915.423 kb on + strand, within BWI76_RS04430at 915.425 kb on + strand, within BWI76_RS04430at 915.430 kb on + strand, within BWI76_RS04430at 915.431 kb on - strand, within BWI76_RS04430at 915.431 kb on - strand, within BWI76_RS04430at 915.438 kb on - strand, within BWI76_RS04430at 915.478 kb on + strand, within BWI76_RS04430at 915.497 kb on - strand, within BWI76_RS04430at 915.497 kb on - strand, within BWI76_RS04430at 915.531 kb on - strand, within BWI76_RS04430at 915.532 kb on - strand, within BWI76_RS04430at 915.532 kb on - strand, within BWI76_RS04430at 915.534 kb on - strand, within BWI76_RS04430at 915.557 kb on - strand, within BWI76_RS04430at 915.571 kb on + strand, within BWI76_RS04430at 915.576 kb on - strand, within BWI76_RS04430at 915.579 kb on - strand, within BWI76_RS04430at 915.589 kb on - strand, within BWI76_RS04430at 915.601 kb on - strand, within BWI76_RS04430at 915.601 kb on - strand, within BWI76_RS04430at 915.621 kb on + strand, within BWI76_RS04430at 915.629 kb on - strand, within BWI76_RS04430at 915.629 kb on - strand, within BWI76_RS04430at 915.629 kb on - strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strandat 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.651 kb on + strand, within BWI76_RS04430at 915.658 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.659 kb on - strand, within BWI76_RS04430at 915.680 kb on + strand, within BWI76_RS04430at 915.698 kb on + strand, within BWI76_RS04430at 915.741 kb on + strand, within BWI76_RS04430at 915.741 kb on + strand, within BWI76_RS04430at 915.756 kb on + strand, within BWI76_RS04430at 915.799 kb on + strand, within BWI76_RS04430at 915.818 kb on + strand, within BWI76_RS04430at 915.892 kb on - strand, within BWI76_RS04430at 915.895 kb on + strand, within BWI76_RS04430at 915.915 kb on + strand, within BWI76_RS04430at 915.923 kb on - strandat 915.954 kb on + strandat 915.954 kb on + strandat 915.957 kb on - strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.961 kb on + strandat 915.962 kb on - strandat 915.969 kb on - strandat 915.969 kb on - strandat 915.969 kb on - strandat 915.970 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.039 kb on - strandat 916.044 kb on - strandat 916.068 kb on - strandat 916.238 kb on + strandat 916.294 kb on + strandat 916.294 kb on + strandat 916.303 kb on - strandat 916.389 kb on + strandat 916.390 kb on + strandat 916.390 kb on - strandat 916.397 kb on + strandat 916.398 kb on - strandat 916.418 kb on + strandat 916.418 kb on + strandat 916.426 kb on - strandat 916.438 kb on + strand, within BWI76_RS04435at 916.461 kb on + strand, within BWI76_RS04435at 916.503 kb on + strand, within BWI76_RS04435at 916.503 kb on + strand, within BWI76_RS04435at 916.526 kb on - strand, within BWI76_RS04435at 916.552 kb on + strand, within BWI76_RS04435at 916.552 kb on + strand, within BWI76_RS04435at 916.560 kb on - strand, within BWI76_RS04435at 916.560 kb on - strand, within BWI76_RS04435at 916.565 kb on + strand, within BWI76_RS04435at 916.571 kb on + strand, within BWI76_RS04435at 916.585 kb on + strand, within BWI76_RS04435at 916.830 kb on - strand, within BWI76_RS04435

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
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913,825 - BWI76_RS04420 0.74 +1.5
913,835 - BWI76_RS04420 0.74 -0.6
913,863 - BWI76_RS04420 0.76 -0.1
914,101 + -2.0
914,511 + BWI76_RS04425 0.82 +0.3
914,540 - -1.0
914,630 - +0.0
914,820 - +1.0
914,820 - -1.3
914,836 - +0.0
914,861 + BWI76_RS04430 0.11 -0.4
914,866 - BWI76_RS04430 0.11 -0.5
914,868 + BWI76_RS04430 0.11 +2.5
915,014 - BWI76_RS04430 0.22 -0.1
915,019 - BWI76_RS04430 0.23 -0.2
915,121 + BWI76_RS04430 0.30 -0.8
915,129 - BWI76_RS04430 0.31 +0.0
915,136 + BWI76_RS04430 0.31 -0.4
915,214 - BWI76_RS04430 0.37 +0.7
915,244 + -0.0
915,324 + BWI76_RS04430 0.45 -0.4
915,342 - BWI76_RS04430 0.47 -0.3
915,389 + BWI76_RS04430 0.50 +0.5
915,397 - BWI76_RS04430 0.51 +1.0
915,400 + BWI76_RS04430 0.51 -2.4
915,406 + BWI76_RS04430 0.51 -0.1
915,411 + -0.8
915,423 + BWI76_RS04430 0.53 -1.2
915,423 + BWI76_RS04430 0.53 -0.8
915,425 + BWI76_RS04430 0.53 +0.2
915,430 + BWI76_RS04430 0.53 -0.6
915,431 - BWI76_RS04430 0.53 +0.3
915,431 - BWI76_RS04430 0.53 -1.0
915,438 - BWI76_RS04430 0.54 +0.9
915,478 + BWI76_RS04430 0.57 +0.7
915,497 - BWI76_RS04430 0.58 -0.5
915,497 - BWI76_RS04430 0.58 -2.6
915,531 - BWI76_RS04430 0.61 -1.2
915,532 - BWI76_RS04430 0.61 -0.6
915,532 - BWI76_RS04430 0.61 -0.0
915,534 - BWI76_RS04430 0.61 +0.5
915,557 - BWI76_RS04430 0.63 -0.5
915,571 + BWI76_RS04430 0.64 -0.9
915,576 - BWI76_RS04430 0.64 -0.1
915,579 - BWI76_RS04430 0.64 -1.0
915,589 - BWI76_RS04430 0.65 +1.0
915,601 - BWI76_RS04430 0.66 -0.2
915,601 - BWI76_RS04430 0.66 -2.0
915,621 + BWI76_RS04430 0.67 -0.2
915,629 - BWI76_RS04430 0.68 -0.6
915,629 - BWI76_RS04430 0.68 -0.0
915,629 - BWI76_RS04430 0.68 +1.4
915,651 + BWI76_RS04430 0.70 -1.0
915,651 + BWI76_RS04430 0.70 +0.1
915,651 + BWI76_RS04430 0.70 -0.6
915,651 + BWI76_RS04430 0.70 -1.0
915,651 + BWI76_RS04430 0.70 -2.0
915,651 + BWI76_RS04430 0.70 +0.4
915,651 + BWI76_RS04430 0.70 +1.2
915,651 + BWI76_RS04430 0.70 -1.6
915,651 + -1.8
915,651 + BWI76_RS04430 0.70 -2.5
915,651 + BWI76_RS04430 0.70 +0.7
915,651 + BWI76_RS04430 0.70 -0.1
915,651 + BWI76_RS04430 0.70 -2.7
915,651 + BWI76_RS04430 0.70 +1.0
915,658 - BWI76_RS04430 0.70 -2.2
915,659 - BWI76_RS04430 0.70 -2.5
915,659 - BWI76_RS04430 0.70 +1.0
915,659 - BWI76_RS04430 0.70 +1.0
915,659 - BWI76_RS04430 0.70 -1.6
915,659 - BWI76_RS04430 0.70 -0.6
915,680 + BWI76_RS04430 0.72 -1.0
915,698 + BWI76_RS04430 0.73 +1.0
915,741 + BWI76_RS04430 0.76 +0.2
915,741 + BWI76_RS04430 0.76 -0.5
915,756 + BWI76_RS04430 0.78 -0.5
915,799 + BWI76_RS04430 0.81 -1.4
915,818 + BWI76_RS04430 0.82 -0.8
915,892 - BWI76_RS04430 0.88 +2.0
915,895 + BWI76_RS04430 0.88 +0.4
915,915 + BWI76_RS04430 0.89 -3.0
915,923 - -0.4
915,954 + +0.4
915,954 + -0.0
915,957 - -2.4
915,961 + -0.0
915,961 + +1.2
915,961 + +1.0
915,961 + +1.0
915,961 + -0.1
915,962 - +0.6
915,969 - -1.6
915,969 - -1.0
915,969 - +0.3
915,970 - -2.0
916,039 - -2.8
916,039 - -1.0
916,039 - +1.4
916,039 - -2.2
916,039 - +1.2
916,039 - -0.0
916,039 - -1.8
916,044 - -1.6
916,068 - +1.0
916,238 + -1.5
916,294 + +1.0
916,294 + -1.0
916,303 - -3.1
916,389 + +0.5
916,390 + +2.2
916,390 - -3.0
916,397 + -1.2
916,398 - +1.1
916,418 + -0.6
916,418 + -1.4
916,426 - +1.5
916,438 + BWI76_RS04435 0.10 +0.4
916,461 + BWI76_RS04435 0.12 +0.6
916,503 + BWI76_RS04435 0.16 -0.3
916,503 + BWI76_RS04435 0.16 +0.3
916,526 - BWI76_RS04435 0.19 -1.6
916,552 + BWI76_RS04435 0.21 +1.7
916,552 + BWI76_RS04435 0.21 +0.3
916,560 - BWI76_RS04435 0.22 +0.4
916,560 - BWI76_RS04435 0.22 +0.1
916,565 + BWI76_RS04435 0.22 -0.0
916,571 + BWI76_RS04435 0.23 +0.3
916,585 + BWI76_RS04435 0.24 +0.4
916,830 - BWI76_RS04435 0.48 +0.2

Or see this region's nucleotide sequence