Experiment: RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02995 and BWI76_RS03000 are separated by 36 nucleotides BWI76_RS03000 and BWI76_RS03005 are separated by 192 nucleotides BWI76_RS03005 and BWI76_RS03010 are separated by 190 nucleotides
BWI76_RS02995: BWI76_RS02995 - aspartate carbamoyltransferase, at 613,986 to 614,921
_RS02995
BWI76_RS03000: BWI76_RS03000 - PyrBI operon leader peptide, at 614,958 to 615,062
_RS03000
BWI76_RS03005: BWI76_RS03005 - hypothetical protein, at 615,255 to 615,707
_RS03005
BWI76_RS03010: BWI76_RS03010 - ornithine carbamoyltransferase, at 615,898 to 616,902
_RS03010
Position (kb) 615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 614.303 kb on - strand, within BWI76_RS02995 at 614.318 kb on + strand, within BWI76_RS02995 at 614.407 kb on - strand, within BWI76_RS02995 at 614.469 kb on + strand, within BWI76_RS02995 at 614.469 kb on + strand, within BWI76_RS02995 at 614.477 kb on - strand, within BWI76_RS02995 at 614.488 kb on - strand, within BWI76_RS02995 at 614.503 kb on - strand, within BWI76_RS02995 at 614.557 kb on - strand, within BWI76_RS02995 at 614.919 kb on - strand at 615.106 kb on - strand at 615.140 kb on - strand at 615.140 kb on - strand at 615.279 kb on + strand at 615.300 kb on + strand at 615.323 kb on + strand, within BWI76_RS03005 at 615.331 kb on - strand, within BWI76_RS03005 at 615.331 kb on - strand, within BWI76_RS03005 at 615.356 kb on + strand, within BWI76_RS03005 at 615.617 kb on + strand, within BWI76_RS03005 at 615.682 kb on - strand at 615.739 kb on - strand at 615.800 kb on - strand at 615.823 kb on + strand at 615.829 kb on - strand at 615.858 kb on + strand at 616.124 kb on - strand, within BWI76_RS03010 at 616.214 kb on - strand, within BWI76_RS03010 at 616.216 kb on + strand, within BWI76_RS03010 at 616.224 kb on - strand, within BWI76_RS03010 at 616.361 kb on - strand, within BWI76_RS03010 at 616.361 kb on - strand, within BWI76_RS03010 at 616.388 kb on + strand, within BWI76_RS03010 at 616.423 kb on + strand, within BWI76_RS03010 at 616.431 kb on - strand, within BWI76_RS03010 at 616.480 kb on - strand, within BWI76_RS03010 at 616.480 kb on - strand, within BWI76_RS03010 at 616.489 kb on + strand, within BWI76_RS03010 at 616.507 kb on - strand, within BWI76_RS03010 at 616.530 kb on + strand, within BWI76_RS03010 at 616.695 kb on + strand, within BWI76_RS03010
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x remove 614,303 - BWI76_RS02995 0.34 -2.9 614,318 + BWI76_RS02995 0.35 -0.1 614,407 - BWI76_RS02995 0.45 -0.4 614,469 + BWI76_RS02995 0.52 -0.2 614,469 + BWI76_RS02995 0.52 -0.3 614,477 - BWI76_RS02995 0.52 -0.7 614,488 - BWI76_RS02995 0.54 +0.4 614,503 - BWI76_RS02995 0.55 +1.0 614,557 - BWI76_RS02995 0.61 -0.4 614,919 - -1.0 615,106 - -1.6 615,140 - -1.4 615,140 - +0.6 615,279 + -0.3 615,300 + +0.3 615,323 + BWI76_RS03005 0.15 +0.5 615,331 - BWI76_RS03005 0.17 +0.2 615,331 - BWI76_RS03005 0.17 +1.0 615,356 + BWI76_RS03005 0.22 +1.8 615,617 + BWI76_RS03005 0.80 -1.3 615,682 - +0.3 615,739 - +0.3 615,800 - +0.4 615,823 + +0.9 615,829 - -0.7 615,858 + +0.7 616,124 - BWI76_RS03010 0.22 -1.1 616,214 - BWI76_RS03010 0.31 +0.8 616,216 + BWI76_RS03010 0.32 +0.6 616,224 - BWI76_RS03010 0.32 +0.9 616,361 - BWI76_RS03010 0.46 -0.3 616,361 - BWI76_RS03010 0.46 -1.3 616,388 + BWI76_RS03010 0.49 -0.5 616,423 + BWI76_RS03010 0.52 -1.1 616,431 - BWI76_RS03010 0.53 -2.7 616,480 - BWI76_RS03010 0.58 -0.2 616,480 - BWI76_RS03010 0.58 -0.1 616,489 + BWI76_RS03010 0.59 +0.4 616,507 - BWI76_RS03010 0.61 -0.2 616,530 + BWI76_RS03010 0.63 -0.5 616,695 + BWI76_RS03010 0.79 +0.5
Or see this region's nucleotide sequence