Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29110

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29100 and AO356_29105 overlap by 10 nucleotidesAO356_29105 and AO356_29110 overlap by 4 nucleotidesAO356_29110 and AO356_29115 are separated by 63 nucleotides AO356_29100: AO356_29100 - epimerase, at 6,765,503 to 6,766,510 _29100 AO356_29105: AO356_29105 - fumarylacetoacetate hydrolase, at 6,766,501 to 6,767,493 _29105 AO356_29110: AO356_29110 - cupin, at 6,767,490 to 6,768,062 _29110 AO356_29115: AO356_29115 - Vanillate O-demethylase oxidoreductase, at 6,768,126 to 6,769,079 _29115 Position (kb) 6767 6768 6769Strain fitness (log2 ratio) -1 0 1at 6767.167 kb on - strand, within AO356_29105at 6767.167 kb on - strand, within AO356_29105at 6767.167 kb on - strand, within AO356_29105at 6768.427 kb on + strand, within AO356_29115at 6768.427 kb on + strand, within AO356_29115at 6768.671 kb on - strand, within AO356_29115at 6768.764 kb on - strand, within AO356_29115at 6768.932 kb on - strand, within AO356_29115

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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6,767,167 - AO356_29105 0.67 +0.2
6,767,167 - AO356_29105 0.67 +1.0
6,767,167 - AO356_29105 0.67 -1.1
6,768,427 + AO356_29115 0.32 +1.0
6,768,427 + AO356_29115 0.32 -0.9
6,768,671 - AO356_29115 0.57 -0.7
6,768,764 - AO356_29115 0.67 -0.3
6,768,932 - AO356_29115 0.84 +1.4

Or see this region's nucleotide sequence