Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28570

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28565 and AO356_28570 are separated by 170 nucleotidesAO356_28570 and AO356_28575 are separated by 21 nucleotidesAO356_28575 and AO356_28580 overlap by 4 nucleotides AO356_28565: AO356_28565 - porin, at 6,639,349 to 6,640,905 _28565 AO356_28570: AO356_28570 - ABC transporter substrate-binding protein, at 6,641,076 to 6,642,350 _28570 AO356_28575: AO356_28575 - ABC transporter permease, at 6,642,372 to 6,643,334 _28575 AO356_28580: AO356_28580 - sugar ABC transporter permease, at 6,643,331 to 6,644,173 _28580 Position (kb) 6641 6642 6643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6640.128 kb on - strand, within AO356_28565at 6640.163 kb on + strand, within AO356_28565at 6640.372 kb on + strand, within AO356_28565at 6640.373 kb on - strand, within AO356_28565at 6640.454 kb on + strand, within AO356_28565at 6641.021 kb on + strandat 6641.264 kb on + strand, within AO356_28570at 6641.503 kb on - strand, within AO356_28570at 6641.505 kb on + strand, within AO356_28570at 6641.629 kb on - strand, within AO356_28570at 6641.629 kb on - strand, within AO356_28570at 6641.630 kb on + strand, within AO356_28570at 6641.630 kb on + strand, within AO356_28570at 6641.630 kb on + strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.631 kb on - strand, within AO356_28570at 6641.632 kb on + strand, within AO356_28570at 6641.633 kb on - strand, within AO356_28570at 6641.815 kb on - strand, within AO356_28570at 6641.880 kb on + strand, within AO356_28570at 6641.880 kb on + strand, within AO356_28570at 6641.881 kb on - strand, within AO356_28570at 6641.881 kb on - strand, within AO356_28570at 6641.881 kb on - strand, within AO356_28570at 6642.052 kb on - strand, within AO356_28570at 6642.100 kb on - strand, within AO356_28570at 6642.156 kb on + strand, within AO356_28570at 6642.159 kb on + strand, within AO356_28570at 6642.409 kb on - strandat 6642.522 kb on - strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.152 kb on + strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575at 6643.153 kb on - strand, within AO356_28575

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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6,640,128 - AO356_28565 0.50 -1.3
6,640,163 + AO356_28565 0.52 -1.5
6,640,372 + AO356_28565 0.66 -0.3
6,640,373 - AO356_28565 0.66 -2.5
6,640,454 + AO356_28565 0.71 -1.6
6,641,021 + -2.4
6,641,264 + AO356_28570 0.15 -0.5
6,641,503 - AO356_28570 0.33 -3.0
6,641,505 + AO356_28570 0.34 -2.8
6,641,629 - AO356_28570 0.43 -3.2
6,641,629 - AO356_28570 0.43 -1.2
6,641,630 + AO356_28570 0.43 +0.1
6,641,630 + AO356_28570 0.43 -2.6
6,641,630 + AO356_28570 0.43 -2.4
6,641,631 - AO356_28570 0.44 -2.6
6,641,631 - AO356_28570 0.44 -2.8
6,641,631 - AO356_28570 0.44 -3.0
6,641,631 - AO356_28570 0.44 -2.6
6,641,631 - AO356_28570 0.44 -3.0
6,641,632 + AO356_28570 0.44 -2.7
6,641,633 - AO356_28570 0.44 -2.1
6,641,815 - AO356_28570 0.58 -3.3
6,641,880 + AO356_28570 0.63 -2.6
6,641,880 + AO356_28570 0.63 -1.2
6,641,881 - AO356_28570 0.63 -3.9
6,641,881 - AO356_28570 0.63 -3.8
6,641,881 - AO356_28570 0.63 -1.9
6,642,052 - AO356_28570 0.77 +0.4
6,642,100 - AO356_28570 0.80 -3.4
6,642,156 + AO356_28570 0.85 -2.2
6,642,159 + AO356_28570 0.85 -1.5
6,642,409 - -3.2
6,642,522 - AO356_28575 0.16 -2.2
6,643,152 + AO356_28575 0.81 -3.2
6,643,152 + AO356_28575 0.81 -2.2
6,643,152 + AO356_28575 0.81 -3.2
6,643,153 - AO356_28575 0.81 -1.9
6,643,153 - AO356_28575 0.81 -1.0
6,643,153 - AO356_28575 0.81 -1.7
6,643,153 - AO356_28575 0.81 -2.5
6,643,153 - AO356_28575 0.81 -1.5

Or see this region's nucleotide sequence