Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18120

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18115 and AO356_18120 are separated by 129 nucleotidesAO356_18120 and AO356_18125 are separated by 250 nucleotides AO356_18115: AO356_18115 - transporter, at 4,082,125 to 4,083,036 _18115 AO356_18120: AO356_18120 - MFS transporter, at 4,083,166 to 4,084,353 _18120 AO356_18125: AO356_18125 - copper resistance protein CopD, at 4,084,604 to 4,085,515 _18125 Position (kb) 4083 4084 4085Strain fitness (log2 ratio) -2 -1 0 1at 4082.274 kb on - strand, within AO356_18115at 4082.279 kb on + strand, within AO356_18115at 4082.363 kb on + strand, within AO356_18115at 4082.363 kb on + strand, within AO356_18115at 4082.364 kb on - strand, within AO356_18115at 4082.537 kb on + strand, within AO356_18115at 4082.537 kb on + strand, within AO356_18115at 4082.537 kb on + strand, within AO356_18115at 4082.538 kb on - strand, within AO356_18115at 4082.698 kb on + strand, within AO356_18115at 4082.698 kb on + strand, within AO356_18115at 4082.698 kb on + strand, within AO356_18115at 4082.699 kb on - strand, within AO356_18115at 4082.699 kb on - strand, within AO356_18115at 4082.735 kb on + strand, within AO356_18115at 4082.735 kb on + strand, within AO356_18115at 4082.735 kb on + strand, within AO356_18115at 4082.735 kb on + strand, within AO356_18115at 4082.735 kb on + strand, within AO356_18115at 4082.735 kb on + strand, within AO356_18115at 4082.736 kb on - strand, within AO356_18115at 4082.765 kb on + strand, within AO356_18115at 4082.766 kb on - strand, within AO356_18115at 4082.795 kb on + strand, within AO356_18115at 4082.795 kb on + strand, within AO356_18115at 4082.796 kb on - strand, within AO356_18115at 4082.796 kb on - strand, within AO356_18115at 4082.796 kb on - strand, within AO356_18115at 4083.045 kb on + strandat 4083.045 kb on + strandat 4083.045 kb on + strandat 4083.046 kb on - strandat 4083.046 kb on - strandat 4083.167 kb on + strandat 4083.168 kb on - strandat 4083.168 kb on - strandat 4083.168 kb on - strandat 4083.168 kb on - strandat 4083.174 kb on + strandat 4083.174 kb on + strandat 4083.174 kb on + strandat 4083.175 kb on - strandat 4083.175 kb on - strandat 4084.384 kb on - strandat 4084.384 kb on - strandat 4084.384 kb on - strandat 4084.384 kb on - strandat 4084.402 kb on - strandat 4084.510 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.590 kb on + strandat 4084.591 kb on - strandat 4084.591 kb on - strandat 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.830 kb on + strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.831 kb on - strand, within AO356_18125at 4084.878 kb on + strand, within AO356_18125at 4084.878 kb on + strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125at 4084.879 kb on - strand, within AO356_18125

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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4,082,274 - AO356_18115 0.16 +1.2
4,082,279 + AO356_18115 0.17 +0.7
4,082,363 + AO356_18115 0.26 +0.3
4,082,363 + AO356_18115 0.26 +0.1
4,082,364 - AO356_18115 0.26 -0.4
4,082,537 + AO356_18115 0.45 -0.7
4,082,537 + AO356_18115 0.45 +0.8
4,082,537 + AO356_18115 0.45 -0.3
4,082,538 - AO356_18115 0.45 -1.4
4,082,698 + AO356_18115 0.63 +1.1
4,082,698 + AO356_18115 0.63 +0.2
4,082,698 + AO356_18115 0.63 -2.2
4,082,699 - AO356_18115 0.63 +0.7
4,082,699 - AO356_18115 0.63 -0.1
4,082,735 + AO356_18115 0.67 -0.8
4,082,735 + AO356_18115 0.67 -2.0
4,082,735 + AO356_18115 0.67 +0.2
4,082,735 + AO356_18115 0.67 +0.4
4,082,735 + AO356_18115 0.67 -1.0
4,082,735 + AO356_18115 0.67 +0.1
4,082,736 - AO356_18115 0.67 +1.0
4,082,765 + AO356_18115 0.70 -1.5
4,082,766 - AO356_18115 0.70 +0.1
4,082,795 + AO356_18115 0.73 -2.0
4,082,795 + AO356_18115 0.73 -1.9
4,082,796 - AO356_18115 0.74 -0.5
4,082,796 - AO356_18115 0.74 +1.2
4,082,796 - AO356_18115 0.74 -1.0
4,083,045 + -1.2
4,083,045 + -0.0
4,083,045 + -1.0
4,083,046 - -1.1
4,083,046 - +0.3
4,083,167 + -0.3
4,083,168 - +0.4
4,083,168 - +0.9
4,083,168 - -0.2
4,083,168 - -0.6
4,083,174 + -0.2
4,083,174 + -0.3
4,083,174 + -0.8
4,083,175 - -0.5
4,083,175 - -0.6
4,084,384 - -0.4
4,084,384 - +0.3
4,084,384 - -0.1
4,084,384 - +1.3
4,084,402 - +0.7
4,084,510 + -0.2
4,084,590 + -0.7
4,084,590 + -0.2
4,084,590 + +0.1
4,084,590 + -1.3
4,084,590 + -0.2
4,084,591 - +0.1
4,084,591 - +0.9
4,084,830 + AO356_18125 0.25 -2.0
4,084,830 + AO356_18125 0.25 +0.0
4,084,830 + AO356_18125 0.25 -0.7
4,084,830 + AO356_18125 0.25 +0.4
4,084,830 + AO356_18125 0.25 +1.2
4,084,830 + AO356_18125 0.25 +1.3
4,084,831 - AO356_18125 0.25 -1.1
4,084,831 - AO356_18125 0.25 +0.3
4,084,831 - AO356_18125 0.25 +0.6
4,084,831 - AO356_18125 0.25 -0.1
4,084,831 - AO356_18125 0.25 +0.6
4,084,831 - AO356_18125 0.25 -0.2
4,084,831 - AO356_18125 0.25 +0.1
4,084,831 - AO356_18125 0.25 -0.4
4,084,831 - AO356_18125 0.25 -1.1
4,084,878 + AO356_18125 0.30 -1.3
4,084,878 + AO356_18125 0.30 -0.4
4,084,879 - AO356_18125 0.30 +0.9
4,084,879 - AO356_18125 0.30 -1.2
4,084,879 - AO356_18125 0.30 +1.0
4,084,879 - AO356_18125 0.30 +0.2
4,084,879 - AO356_18125 0.30 +0.1
4,084,879 - AO356_18125 0.30 +0.1
4,084,879 - AO356_18125 0.30 +0.2
4,084,879 - AO356_18125 0.30 +1.3
4,084,879 - AO356_18125 0.30 +0.9
4,084,879 - AO356_18125 0.30 +0.4
4,084,879 - AO356_18125 0.30 -0.4
4,084,879 - AO356_18125 0.30 -2.0

Or see this region's nucleotide sequence