Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_15815

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_15810 and AO356_15815 are separated by 291 nucleotidesAO356_15815 and AO356_15820 are separated by 9 nucleotidesAO356_15820 and AO356_15825 are separated by 172 nucleotides AO356_15810: AO356_15810 - GTPase CgtA, at 3,580,772 to 3,581,995 _15810 AO356_15815: AO356_15815 - gamma-glutamyl kinase, at 3,582,287 to 3,583,405 _15815 AO356_15820: AO356_15820 - hypothetical protein, at 3,583,415 to 3,583,879 _15820 AO356_15825: AO356_15825 - 30S ribosomal protein S20, at 3,584,052 to 3,584,330 _15825 Position (kb) 3582 3583 3584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3581.981 kb on + strandat 3581.981 kb on + strandat 3581.981 kb on + strandat 3582.007 kb on + strandat 3582.007 kb on + strandat 3582.008 kb on - strandat 3582.085 kb on + strandat 3582.085 kb on + strandat 3582.085 kb on + strandat 3582.085 kb on + strandat 3582.085 kb on + strandat 3582.085 kb on + strandat 3582.085 kb on + strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.086 kb on - strandat 3582.156 kb on + strandat 3582.156 kb on + strandat 3582.156 kb on + strandat 3582.211 kb on + strandat 3582.211 kb on + strandat 3582.211 kb on + strandat 3582.217 kb on + strandat 3582.228 kb on + strandat 3582.228 kb on + strandat 3582.234 kb on + strandat 3582.234 kb on + strandat 3582.234 kb on + strandat 3583.177 kb on + strand, within AO356_15815at 3583.177 kb on + strand, within AO356_15815at 3583.404 kb on - strandat 3583.578 kb on - strand, within AO356_15820at 3583.578 kb on - strand, within AO356_15820at 3583.578 kb on - strand, within AO356_15820at 3583.723 kb on + strand, within AO356_15820at 3583.723 kb on + strand, within AO356_15820at 3583.723 kb on + strand, within AO356_15820at 3583.723 kb on + strand, within AO356_15820at 3583.723 kb on + strand, within AO356_15820at 3583.723 kb on + strand, within AO356_15820at 3583.724 kb on - strand, within AO356_15820at 3583.724 kb on - strand, within AO356_15820at 3583.724 kb on - strand, within AO356_15820at 3583.724 kb on - strand, within AO356_15820at 3583.724 kb on - strand, within AO356_15820at 3583.724 kb on - strand, within AO356_15820at 3583.777 kb on + strand, within AO356_15820at 3583.777 kb on + strand, within AO356_15820at 3583.777 kb on + strand, within AO356_15820at 3583.778 kb on - strand, within AO356_15820at 3583.778 kb on - strand, within AO356_15820at 3583.778 kb on - strand, within AO356_15820at 3583.778 kb on - strand, within AO356_15820at 3583.778 kb on - strand, within AO356_15820at 3583.780 kb on + strand, within AO356_15820at 3583.780 kb on + strand, within AO356_15820at 3583.780 kb on + strand, within AO356_15820at 3583.780 kb on + strand, within AO356_15820at 3583.780 kb on + strand, within AO356_15820at 3583.781 kb on - strand, within AO356_15820at 3583.781 kb on - strand, within AO356_15820at 3583.781 kb on - strand, within AO356_15820at 3583.781 kb on - strand, within AO356_15820at 3583.781 kb on - strand, within AO356_15820at 3583.790 kb on + strand, within AO356_15820at 3583.790 kb on + strand, within AO356_15820at 3583.790 kb on + strand, within AO356_15820at 3583.791 kb on - strand, within AO356_15820at 3583.791 kb on - strand, within AO356_15820at 3583.799 kb on + strand, within AO356_15820at 3583.799 kb on + strand, within AO356_15820at 3583.877 kb on + strandat 3583.878 kb on - strandat 3583.888 kb on + strandat 3583.888 kb on + strandat 3583.888 kb on + strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.889 kb on - strandat 3583.931 kb on + strandat 3583.931 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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3,581,981 + +1.3
3,581,981 + -0.8
3,581,981 + -0.7
3,582,007 + -0.1
3,582,007 + +1.0
3,582,008 - -1.9
3,582,085 + -0.5
3,582,085 + -1.2
3,582,085 + -0.9
3,582,085 + +1.1
3,582,085 + +1.8
3,582,085 + +0.6
3,582,085 + +0.6
3,582,086 - +1.1
3,582,086 - +0.5
3,582,086 - -0.4
3,582,086 - +0.3
3,582,086 - +0.1
3,582,086 - +0.3
3,582,086 - +0.9
3,582,086 - +0.1
3,582,086 - +0.3
3,582,086 - -1.2
3,582,086 - -0.7
3,582,086 - -0.5
3,582,086 - -0.3
3,582,156 + +0.8
3,582,156 + -0.9
3,582,156 + +0.1
3,582,211 + -0.1
3,582,211 + +0.1
3,582,211 + +0.1
3,582,217 + +0.4
3,582,228 + +0.4
3,582,228 + +0.5
3,582,234 + +0.1
3,582,234 + -1.0
3,582,234 + -1.0
3,583,177 + AO356_15815 0.80 -3.5
3,583,177 + AO356_15815 0.80 -1.7
3,583,404 - -0.2
3,583,578 - AO356_15820 0.35 -0.2
3,583,578 - AO356_15820 0.35 +0.2
3,583,578 - AO356_15820 0.35 -0.5
3,583,723 + AO356_15820 0.66 -2.1
3,583,723 + AO356_15820 0.66 +0.0
3,583,723 + AO356_15820 0.66 -0.6
3,583,723 + AO356_15820 0.66 +0.6
3,583,723 + AO356_15820 0.66 +1.1
3,583,723 + AO356_15820 0.66 -0.5
3,583,724 - AO356_15820 0.66 -1.0
3,583,724 - AO356_15820 0.66 +0.5
3,583,724 - AO356_15820 0.66 -1.0
3,583,724 - AO356_15820 0.66 -2.1
3,583,724 - AO356_15820 0.66 +0.2
3,583,724 - AO356_15820 0.66 +1.4
3,583,777 + AO356_15820 0.78 +1.2
3,583,777 + AO356_15820 0.78 +1.1
3,583,777 + AO356_15820 0.78 +0.4
3,583,778 - AO356_15820 0.78 +0.3
3,583,778 - AO356_15820 0.78 +0.4
3,583,778 - AO356_15820 0.78 -0.7
3,583,778 - AO356_15820 0.78 +1.3
3,583,778 - AO356_15820 0.78 +0.6
3,583,780 + AO356_15820 0.78 -1.4
3,583,780 + AO356_15820 0.78 -1.0
3,583,780 + AO356_15820 0.78 -0.4
3,583,780 + AO356_15820 0.78 +0.2
3,583,780 + AO356_15820 0.78 +0.0
3,583,781 - AO356_15820 0.79 +0.6
3,583,781 - AO356_15820 0.79 +0.1
3,583,781 - AO356_15820 0.79 -0.5
3,583,781 - AO356_15820 0.79 +2.0
3,583,781 - AO356_15820 0.79 -0.4
3,583,790 + AO356_15820 0.81 +0.6
3,583,790 + AO356_15820 0.81 -0.5
3,583,790 + AO356_15820 0.81 +0.3
3,583,791 - AO356_15820 0.81 -1.7
3,583,791 - AO356_15820 0.81 +0.1
3,583,799 + AO356_15820 0.83 +0.1
3,583,799 + AO356_15820 0.83 +0.9
3,583,877 + +0.5
3,583,878 - +0.7
3,583,888 + +2.0
3,583,888 + -0.2
3,583,888 + +0.5
3,583,889 - -0.7
3,583,889 - +0.6
3,583,889 - +0.4
3,583,889 - +0.3
3,583,889 - +0.2
3,583,889 - +0.1
3,583,889 - +0.0
3,583,889 - -0.9
3,583,889 - -0.7
3,583,931 + +0.9
3,583,931 + +0.1

Or see this region's nucleotide sequence