Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11655

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11650 and AO356_11655 are separated by 240 nucleotidesAO356_11655 and AO356_11660 are separated by 79 nucleotides AO356_11650: AO356_11650 - ribonuclease P protein component, at 2,640,160 to 2,640,561 _11650 AO356_11655: AO356_11655 - insertase, at 2,640,802 to 2,642,484 _11655 AO356_11660: AO356_11660 - tRNA modification GTPase MnmE, at 2,642,564 to 2,643,934 _11660 Position (kb) 2640 2641 2642 2643Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2639.803 kb on + strandat 2639.842 kb on + strandat 2639.842 kb on + strandat 2639.842 kb on + strandat 2639.848 kb on + strandat 2639.848 kb on + strandat 2639.850 kb on + strandat 2639.850 kb on + strandat 2639.850 kb on + strandat 2639.851 kb on - strandat 2639.851 kb on - strandat 2639.851 kb on - strandat 2639.851 kb on - strandat 2639.854 kb on + strandat 2639.854 kb on + strandat 2639.854 kb on + strandat 2639.855 kb on - strandat 2639.855 kb on - strandat 2639.855 kb on - strandat 2639.890 kb on + strandat 2639.890 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.894 kb on + strandat 2639.895 kb on - strandat 2639.898 kb on + strandat 2639.899 kb on - strandat 2639.899 kb on - strandat 2640.512 kb on + strand, within AO356_11650at 2640.542 kb on + strandat 2640.542 kb on + strandat 2640.559 kb on + strandat 2640.587 kb on + strandat 2640.587 kb on + strandat 2640.593 kb on + strandat 2640.601 kb on + strandat 2640.601 kb on + strandat 2640.650 kb on + strandat 2640.666 kb on + strandat 2640.714 kb on + strandat 2642.482 kb on + strandat 2642.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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2,639,803 + +0.0
2,639,842 + -1.0
2,639,842 + -0.3
2,639,842 + -0.2
2,639,848 + +1.4
2,639,848 + -1.0
2,639,850 + -0.6
2,639,850 + +0.2
2,639,850 + -1.1
2,639,851 - -1.8
2,639,851 - -1.3
2,639,851 - +0.0
2,639,851 - -1.7
2,639,854 + +1.6
2,639,854 + +0.1
2,639,854 + -1.2
2,639,855 - -0.5
2,639,855 - -1.0
2,639,855 - -0.5
2,639,890 + +0.7
2,639,890 + -2.9
2,639,894 + +0.5
2,639,894 + -0.5
2,639,894 + +0.5
2,639,894 + +0.3
2,639,894 + -0.8
2,639,894 + +0.6
2,639,894 + +0.6
2,639,894 + +0.8
2,639,894 + +1.2
2,639,894 + -0.8
2,639,894 + +0.2
2,639,894 + -0.1
2,639,894 + -0.8
2,639,895 - +2.0
2,639,898 + +0.3
2,639,899 - -1.7
2,639,899 - -0.1
2,640,512 + AO356_11650 0.88 -1.4
2,640,542 + +0.0
2,640,542 + +1.2
2,640,559 + -1.3
2,640,587 + +0.6
2,640,587 + +0.4
2,640,593 + +0.8
2,640,601 + -0.2
2,640,601 + -0.0
2,640,650 + -1.1
2,640,666 + -0.3
2,640,714 + -0.3
2,642,482 + +0.7
2,642,563 + -2.6

Or see this region's nucleotide sequence