Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02425 and AO356_02430 overlap by 1 nucleotides AO356_02430 and AO356_02435 are separated by 5 nucleotides AO356_02435 and AO356_02440 overlap by 4 nucleotides
AO356_02425: AO356_02425 - cytochrome C oxidase Cbb3, at 528,679 to 530,121
_02425
AO356_02430: AO356_02430 - cytochrome C oxidase Cbb3, at 530,121 to 530,729
_02430
AO356_02435: AO356_02435 - cytochrome oxidase, at 530,735 to 530,920
_02435
AO356_02440: AO356_02440 - cytochrome C oxidase Cbb3, at 530,917 to 531,900
_02440
Position (kb) 530
531 Strain fitness (log2 ratio) -1
0
1
2 at 529.153 kb on + strand, within AO356_02425 at 529.153 kb on + strand, within AO356_02425 at 529.153 kb on + strand, within AO356_02425 at 529.153 kb on + strand, within AO356_02425 at 529.153 kb on + strand, within AO356_02425 at 529.294 kb on + strand, within AO356_02425 at 529.349 kb on - strand, within AO356_02425 at 529.349 kb on - strand, within AO356_02425 at 529.350 kb on + strand, within AO356_02425 at 529.351 kb on + strand, within AO356_02425 at 529.351 kb on + strand, within AO356_02425 at 529.351 kb on + strand, within AO356_02425 at 529.385 kb on - strand, within AO356_02425 at 529.385 kb on - strand, within AO356_02425 at 529.385 kb on - strand, within AO356_02425 at 529.391 kb on - strand, within AO356_02425 at 529.432 kb on + strand, within AO356_02425 at 529.432 kb on + strand, within AO356_02425 at 529.462 kb on + strand, within AO356_02425 at 529.462 kb on + strand, within AO356_02425 at 529.578 kb on + strand, within AO356_02425 at 529.578 kb on + strand, within AO356_02425 at 529.579 kb on - strand, within AO356_02425 at 529.694 kb on - strand, within AO356_02425 at 529.718 kb on + strand, within AO356_02425 at 529.864 kb on + strand, within AO356_02425 at 529.864 kb on + strand, within AO356_02425 at 529.864 kb on + strand, within AO356_02425 at 529.864 kb on + strand, within AO356_02425 at 529.865 kb on - strand, within AO356_02425 at 529.943 kb on - strand, within AO356_02425 at 529.943 kb on - strand, within AO356_02425 at 529.943 kb on - strand, within AO356_02425 at 529.988 kb on + strand at 529.989 kb on - strand at 529.989 kb on - strand at 530.039 kb on - strand at 530.105 kb on + strand at 530.295 kb on + strand, within AO356_02430 at 530.295 kb on + strand, within AO356_02430 at 530.493 kb on + strand, within AO356_02430 at 530.493 kb on + strand, within AO356_02430 at 530.493 kb on + strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.494 kb on - strand, within AO356_02430 at 530.616 kb on + strand, within AO356_02430 at 530.617 kb on - strand, within AO356_02430 at 530.617 kb on - strand, within AO356_02430 at 530.688 kb on + strand at 530.688 kb on + strand at 530.688 kb on + strand at 530.902 kb on + strand at 530.902 kb on + strand at 530.902 kb on + strand at 530.903 kb on - strand at 530.939 kb on - strand at 530.939 kb on - strand at 530.939 kb on - strand at 530.962 kb on - strand at 531.064 kb on + strand, within AO356_02440 at 531.065 kb on - strand, within AO356_02440 at 531.065 kb on - strand, within AO356_02440 at 531.181 kb on + strand, within AO356_02440 at 531.181 kb on + strand, within AO356_02440 at 531.182 kb on - strand, within AO356_02440 at 531.183 kb on + strand, within AO356_02440 at 531.183 kb on + strand, within AO356_02440 at 531.183 kb on + strand, within AO356_02440 at 531.183 kb on + strand, within AO356_02440 at 531.184 kb on - strand, within AO356_02440 at 531.184 kb on - strand, within AO356_02440 at 531.184 kb on - strand, within AO356_02440 at 531.184 kb on - strand, within AO356_02440 at 531.184 kb on - strand, within AO356_02440 at 531.184 kb on - strand, within AO356_02440 at 531.187 kb on + strand, within AO356_02440 at 531.188 kb on - strand, within AO356_02440 at 531.188 kb on - strand, within AO356_02440 at 531.568 kb on + strand, within AO356_02440 at 531.568 kb on + strand, within AO356_02440
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 529,153 + AO356_02425 0.33 +1.5 529,153 + AO356_02425 0.33 +0.7 529,153 + AO356_02425 0.33 +0.1 529,153 + AO356_02425 0.33 +0.2 529,153 + AO356_02425 0.33 +0.4 529,294 + AO356_02425 0.43 +0.8 529,349 - AO356_02425 0.46 +1.9 529,349 - AO356_02425 0.46 +0.4 529,350 + AO356_02425 0.47 +1.0 529,351 + AO356_02425 0.47 +1.5 529,351 + AO356_02425 0.47 +1.3 529,351 + AO356_02425 0.47 -0.8 529,385 - AO356_02425 0.49 -0.3 529,385 - AO356_02425 0.49 +1.0 529,385 - AO356_02425 0.49 +1.0 529,391 - AO356_02425 0.49 +1.3 529,432 + AO356_02425 0.52 +0.7 529,432 + AO356_02425 0.52 +0.0 529,462 + AO356_02425 0.54 +0.1 529,462 + AO356_02425 0.54 -0.5 529,578 + AO356_02425 0.62 +0.7 529,578 + AO356_02425 0.62 +2.4 529,579 - AO356_02425 0.62 +1.5 529,694 - AO356_02425 0.70 +0.9 529,718 + AO356_02425 0.72 +1.4 529,864 + AO356_02425 0.82 -0.9 529,864 + AO356_02425 0.82 +0.4 529,864 + AO356_02425 0.82 +0.4 529,864 + AO356_02425 0.82 +0.1 529,865 - AO356_02425 0.82 +0.7 529,943 - AO356_02425 0.88 +0.6 529,943 - AO356_02425 0.88 +1.7 529,943 - AO356_02425 0.88 +0.6 529,988 + +0.4 529,989 - +2.3 529,989 - -1.6 530,039 - +0.8 530,105 + +1.0 530,295 + AO356_02430 0.29 -0.6 530,295 + AO356_02430 0.29 +2.1 530,493 + AO356_02430 0.61 +1.4 530,493 + AO356_02430 0.61 +0.1 530,493 + AO356_02430 0.61 +1.6 530,494 - AO356_02430 0.61 +0.6 530,494 - AO356_02430 0.61 -0.2 530,494 - AO356_02430 0.61 +0.9 530,494 - AO356_02430 0.61 +2.6 530,494 - AO356_02430 0.61 +1.5 530,494 - AO356_02430 0.61 +1.2 530,494 - AO356_02430 0.61 +0.3 530,494 - AO356_02430 0.61 -0.1 530,616 + AO356_02430 0.81 +0.8 530,617 - AO356_02430 0.81 +1.1 530,617 - AO356_02430 0.81 +0.6 530,688 + -0.4 530,688 + +1.4 530,688 + +1.7 530,902 + +1.0 530,902 + -0.4 530,902 + -0.4 530,903 - +1.4 530,939 - +2.3 530,939 - +1.9 530,939 - -1.1 530,962 - +1.7 531,064 + AO356_02440 0.15 +0.7 531,065 - AO356_02440 0.15 +0.3 531,065 - AO356_02440 0.15 +0.8 531,181 + AO356_02440 0.27 -0.1 531,181 + AO356_02440 0.27 -0.5 531,182 - AO356_02440 0.27 +1.5 531,183 + AO356_02440 0.27 +2.2 531,183 + AO356_02440 0.27 +1.1 531,183 + AO356_02440 0.27 +0.5 531,183 + AO356_02440 0.27 +0.2 531,184 - AO356_02440 0.27 +0.5 531,184 - AO356_02440 0.27 +1.5 531,184 - AO356_02440 0.27 +0.8 531,184 - AO356_02440 0.27 -1.0 531,184 - AO356_02440 0.27 +1.1 531,184 - AO356_02440 0.27 +0.4 531,187 + AO356_02440 0.27 +1.1 531,188 - AO356_02440 0.28 +0.8 531,188 - AO356_02440 0.28 +0.8 531,568 + AO356_02440 0.66 +1.6 531,568 + AO356_02440 0.66 +0.6
Or see this region's nucleotide sequence