Experiment: MoLS4 without Folic with Casamino acids (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1100 and DVU1101 are separated by 1 nucleotides DVU1101 and DVU1102 are separated by 154 nucleotides
DVU1100: DVU1100 - tail fiber protein, putative (TIGR), at 1,205,871 to 1,207,388
DVU1100
DVU1101: DVU1101 - hypothetical protein (TIGR), at 1,207,390 to 1,208,046
DVU1101
DVU1102: DVU1102 - baseplate assembly protein, putative (TIGR), at 1,208,201 to 1,209,355
DVU1102
Position (kb)
1207
1208
1209 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1206.402 kb on + strand, within DVU1100 at 1206.405 kb on - strand, within DVU1100 at 1206.445 kb on - strand, within DVU1100 at 1206.467 kb on + strand, within DVU1100 at 1206.475 kb on - strand, within DVU1100 at 1206.603 kb on + strand, within DVU1100 at 1206.616 kb on + strand, within DVU1100 at 1206.624 kb on - strand, within DVU1100 at 1206.665 kb on - strand, within DVU1100 at 1206.714 kb on + strand, within DVU1100 at 1206.721 kb on + strand, within DVU1100 at 1206.787 kb on + strand, within DVU1100 at 1206.874 kb on - strand, within DVU1100 at 1206.896 kb on - strand, within DVU1100 at 1206.957 kb on - strand, within DVU1100 at 1206.993 kb on + strand, within DVU1100 at 1207.002 kb on - strand, within DVU1100 at 1207.056 kb on + strand, within DVU1100 at 1207.112 kb on - strand, within DVU1100 at 1207.201 kb on + strand, within DVU1100 at 1207.201 kb on + strand, within DVU1100 at 1207.201 kb on + strand, within DVU1100 at 1207.209 kb on - strand, within DVU1100 at 1207.209 kb on - strand, within DVU1100 at 1207.209 kb on - strand, within DVU1100 at 1207.223 kb on - strand, within DVU1100 at 1207.238 kb on - strand at 1207.297 kb on - strand at 1207.297 kb on - strand at 1207.454 kb on + strand at 1207.481 kb on + strand, within DVU1101 at 1207.484 kb on - strand, within DVU1101 at 1207.484 kb on - strand, within DVU1101 at 1207.562 kb on - strand, within DVU1101 at 1207.562 kb on - strand, within DVU1101 at 1207.638 kb on - strand, within DVU1101 at 1207.829 kb on - strand, within DVU1101 at 1207.862 kb on + strand, within DVU1101 at 1207.870 kb on - strand, within DVU1101 at 1207.882 kb on - strand, within DVU1101 at 1207.896 kb on + strand, within DVU1101 at 1207.948 kb on - strand, within DVU1101 at 1208.052 kb on - strand at 1208.097 kb on - strand at 1208.129 kb on - strand at 1208.256 kb on - strand at 1208.318 kb on - strand, within DVU1102 at 1208.328 kb on - strand, within DVU1102 at 1208.330 kb on + strand, within DVU1102 at 1208.364 kb on - strand, within DVU1102 at 1208.364 kb on - strand, within DVU1102 at 1208.414 kb on + strand, within DVU1102 at 1208.417 kb on - strand, within DVU1102 at 1208.446 kb on + strand, within DVU1102 at 1208.466 kb on + strand, within DVU1102 at 1208.466 kb on + strand, within DVU1102 at 1208.466 kb on + strand, within DVU1102 at 1208.474 kb on - strand, within DVU1102 at 1208.516 kb on - strand, within DVU1102 at 1208.525 kb on - strand, within DVU1102 at 1208.558 kb on - strand, within DVU1102 at 1208.567 kb on + strand, within DVU1102 at 1208.582 kb on - strand, within DVU1102 at 1208.592 kb on + strand, within DVU1102 at 1208.648 kb on - strand, within DVU1102 at 1208.648 kb on - strand, within DVU1102 at 1208.648 kb on - strand, within DVU1102 at 1208.653 kb on - strand, within DVU1102 at 1208.669 kb on - strand, within DVU1102 at 1208.721 kb on + strand, within DVU1102 at 1208.736 kb on + strand, within DVU1102 at 1208.740 kb on + strand, within DVU1102 at 1208.814 kb on - strand, within DVU1102 at 1208.904 kb on + strand, within DVU1102 at 1208.904 kb on + strand, within DVU1102 at 1208.910 kb on + strand, within DVU1102 at 1208.912 kb on - strand, within DVU1102 at 1208.920 kb on + strand, within DVU1102 at 1208.920 kb on + strand, within DVU1102 at 1208.925 kb on + strand, within DVU1102 at 1208.925 kb on + strand, within DVU1102 at 1208.959 kb on + strand, within DVU1102 at 1209.031 kb on + strand, within DVU1102
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Folic with Casamino acids (vit. assay) 0.05% remove 1,206,402 + DVU1100 0.35 -0.2 1,206,405 - DVU1100 0.35 -0.4 1,206,445 - DVU1100 0.38 +0.4 1,206,467 + DVU1100 0.39 +0.8 1,206,475 - DVU1100 0.40 -0.3 1,206,603 + DVU1100 0.48 -1.3 1,206,616 + DVU1100 0.49 -0.2 1,206,624 - DVU1100 0.50 -1.1 1,206,665 - DVU1100 0.52 -0.2 1,206,714 + DVU1100 0.56 -0.4 1,206,721 + DVU1100 0.56 +0.7 1,206,787 + DVU1100 0.60 +1.1 1,206,874 - DVU1100 0.66 +0.7 1,206,896 - DVU1100 0.68 -0.7 1,206,957 - DVU1100 0.72 -1.2 1,206,993 + DVU1100 0.74 -1.3 1,207,002 - DVU1100 0.75 -2.7 1,207,056 + DVU1100 0.78 +0.8 1,207,112 - DVU1100 0.82 -0.5 1,207,201 + DVU1100 0.88 -0.8 1,207,201 + DVU1100 0.88 -0.2 1,207,201 + DVU1100 0.88 -0.6 1,207,209 - DVU1100 0.88 -0.2 1,207,209 - DVU1100 0.88 +0.9 1,207,209 - DVU1100 0.88 -0.6 1,207,223 - DVU1100 0.89 -1.3 1,207,238 - +0.0 1,207,297 - -0.1 1,207,297 - -0.2 1,207,454 + +0.4 1,207,481 + DVU1101 0.14 -0.3 1,207,484 - DVU1101 0.14 -0.1 1,207,484 - DVU1101 0.14 +0.3 1,207,562 - DVU1101 0.26 -0.1 1,207,562 - DVU1101 0.26 +0.4 1,207,638 - DVU1101 0.38 -0.7 1,207,829 - DVU1101 0.67 +3.1 1,207,862 + DVU1101 0.72 +0.9 1,207,870 - DVU1101 0.73 +0.1 1,207,882 - DVU1101 0.75 +0.6 1,207,896 + DVU1101 0.77 -0.0 1,207,948 - DVU1101 0.85 +1.7 1,208,052 - -1.8 1,208,097 - +0.1 1,208,129 - +0.0 1,208,256 - -0.3 1,208,318 - DVU1102 0.10 -0.6 1,208,328 - DVU1102 0.11 -0.1 1,208,330 + DVU1102 0.11 +0.4 1,208,364 - DVU1102 0.14 +0.2 1,208,364 - DVU1102 0.14 -0.4 1,208,414 + DVU1102 0.18 -0.2 1,208,417 - DVU1102 0.19 -0.0 1,208,446 + DVU1102 0.21 +1.0 1,208,466 + DVU1102 0.23 +0.8 1,208,466 + DVU1102 0.23 -0.2 1,208,466 + DVU1102 0.23 -0.1 1,208,474 - DVU1102 0.24 +1.0 1,208,516 - DVU1102 0.27 +0.1 1,208,525 - DVU1102 0.28 +0.1 1,208,558 - DVU1102 0.31 -1.2 1,208,567 + DVU1102 0.32 -1.5 1,208,582 - DVU1102 0.33 +0.3 1,208,592 + DVU1102 0.34 -0.0 1,208,648 - DVU1102 0.39 +0.1 1,208,648 - DVU1102 0.39 -0.0 1,208,648 - DVU1102 0.39 +3.2 1,208,653 - DVU1102 0.39 +0.0 1,208,669 - DVU1102 0.41 -0.1 1,208,721 + DVU1102 0.45 -0.5 1,208,736 + DVU1102 0.46 -0.3 1,208,740 + DVU1102 0.47 +0.4 1,208,814 - DVU1102 0.53 -0.0 1,208,904 + DVU1102 0.61 +0.3 1,208,904 + DVU1102 0.61 +0.1 1,208,910 + DVU1102 0.61 -0.9 1,208,912 - DVU1102 0.62 -0.6 1,208,920 + DVU1102 0.62 -0.8 1,208,920 + DVU1102 0.62 -0.1 1,208,925 + DVU1102 0.63 +0.2 1,208,925 + DVU1102 0.63 +1.7 1,208,959 + DVU1102 0.66 -1.9 1,209,031 + DVU1102 0.72 +0.0
Or see this region's nucleotide sequence