Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2298
Experiment: MoLS4 without Folic with Casamino acids (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoLS4 without Folic with Casamino acids (vit. assay) 0.05% |
---|---|---|---|---|---|
remove | |||||
2,391,165 | - | +0.5 | |||
2,391,226 | + | DVU2297 | 0.11 | -0.3 | |
2,391,242 | - | DVU2297 | 0.13 | -0.8 | |
2,391,291 | + | DVU2297 | 0.19 | -0.2 | |
2,391,305 | - | DVU2297 | 0.20 | -1.2 | |
2,391,314 | + | DVU2297 | 0.21 | -0.6 | |
2,391,777 | + | DVU2297 | 0.75 | +0.7 | |
2,391,846 | + | DVU2297 | 0.83 | -0.3 | |
2,391,900 | + | DVU2297 | 0.90 | -0.8 | |
2,392,002 | - | +0.3 | |||
2,392,013 | + | +0.3 | |||
2,392,029 | + | -0.1 | |||
2,392,064 | - | +0.3 | |||
2,392,247 | + | opuBB | DVU2298 | 0.12 | -0.7 |
2,392,262 | - | opuBB | DVU2298 | 0.14 | +0.4 |
2,392,299 | + | opuBB | DVU2298 | 0.18 | +0.1 |
2,392,390 | + | opuBB | DVU2298 | 0.29 | -3.1 |
2,392,390 | + | opuBB | DVU2298 | 0.29 | -0.8 |
2,392,427 | + | opuBB | DVU2298 | 0.33 | -1.9 |
2,392,450 | + | opuBB | DVU2298 | 0.36 | -0.3 |
2,392,508 | + | opuBB | DVU2298 | 0.42 | -1.0 |
2,392,592 | + | opuBB | DVU2298 | 0.52 | +0.7 |
2,392,600 | - | opuBB | DVU2298 | 0.53 | -0.2 |
2,392,653 | + | opuBB | DVU2298 | 0.60 | -0.3 |
2,393,241 | - | proV | DVU2299 | 0.21 | -0.5 |
2,393,241 | - | proV | DVU2299 | 0.21 | -0.7 |
2,393,304 | + | proV | DVU2299 | 0.26 | +0.7 |
2,393,314 | + | proV | DVU2299 | 0.27 | +1.4 |
2,393,430 | + | proV | DVU2299 | 0.37 | +0.8 |
2,393,438 | + | proV | DVU2299 | 0.37 | -0.6 |
2,393,438 | + | proV | DVU2299 | 0.37 | -1.2 |
2,393,440 | + | proV | DVU2299 | 0.37 | +0.2 |
2,393,464 | - | proV | DVU2299 | 0.39 | -0.9 |
2,393,469 | - | proV | DVU2299 | 0.40 | -0.3 |
2,393,518 | + | proV | DVU2299 | 0.44 | -0.7 |
2,393,533 | + | proV | DVU2299 | 0.45 | +2.9 |
2,393,541 | - | proV | DVU2299 | 0.46 | -0.2 |
2,393,620 | + | proV | DVU2299 | 0.52 | -0.8 |
2,393,688 | + | proV | DVU2299 | 0.58 | -0.2 |
2,393,696 | - | proV | DVU2299 | 0.59 | -0.8 |
2,393,731 | + | proV | DVU2299 | 0.62 | -1.3 |
2,393,739 | - | proV | DVU2299 | 0.62 | -0.7 |
2,393,747 | - | proV | DVU2299 | 0.63 | -0.3 |
2,393,793 | - | proV | DVU2299 | 0.67 | -1.3 |
2,393,816 | + | proV | DVU2299 | 0.69 | -0.7 |
2,393,816 | + | proV | DVU2299 | 0.69 | +0.1 |
2,393,821 | + | proV | DVU2299 | 0.69 | +0.1 |
2,393,824 | - | proV | DVU2299 | 0.70 | -0.9 |
2,393,826 | + | proV | DVU2299 | 0.70 | -1.0 |
2,393,830 | + | proV | DVU2299 | 0.70 | +0.3 |
2,393,878 | + | proV | DVU2299 | 0.74 | +1.7 |
Or see this region's nucleotide sequence