Experiment: MoLS4 without Folic with Casamino acids (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2197 and DVU2198 are separated by 524 nucleotides DVU2198 and DVU2200 are separated by 398 nucleotides
DVU2197: DVU2197 - site-specific recombinase, phage integrase family (TIGR), at 2,292,764 to 2,293,693
DVU2197
DVU2198: DVU2198 - hypothetical protein (TIGR), at 2,294,218 to 2,294,415
DVU2198
DVU2200: DVU2200 - hypothetical protein (TIGR), at 2,294,814 to 2,295,194
DVU2200
Position (kb)
2294
2295 Strain fitness (log2 ratio)
-1
0
1
2 at 2293.233 kb on - strand, within DVU2197 at 2293.238 kb on - strand, within DVU2197 at 2293.265 kb on + strand, within DVU2197 at 2293.365 kb on - strand, within DVU2197 at 2293.394 kb on - strand, within DVU2197 at 2293.408 kb on + strand, within DVU2197 at 2293.425 kb on - strand, within DVU2197 at 2293.426 kb on + strand, within DVU2197 at 2293.440 kb on + strand, within DVU2197 at 2293.485 kb on + strand, within DVU2197 at 2293.485 kb on + strand, within DVU2197 at 2293.485 kb on + strand, within DVU2197 at 2293.493 kb on - strand, within DVU2197 at 2293.554 kb on + strand, within DVU2197 at 2293.562 kb on - strand, within DVU2197 at 2293.595 kb on - strand, within DVU2197 at 2293.661 kb on + strand at 2293.689 kb on - strand at 2293.697 kb on - strand at 2293.771 kb on - strand at 2293.773 kb on - strand at 2293.778 kb on - strand at 2293.835 kb on - strand at 2294.158 kb on + strand at 2294.206 kb on - strand at 2294.237 kb on - strand at 2294.344 kb on + strand, within DVU2198 at 2294.775 kb on - strand at 2294.828 kb on + strand at 2294.871 kb on + strand, within DVU2200 at 2294.943 kb on - strand, within DVU2200 at 2295.194 kb on + strand at 2295.279 kb on - strand at 2295.296 kb on - strand at 2295.347 kb on - strand at 2295.347 kb on - strand at 2295.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Folic with Casamino acids (vit. assay) 0.05% remove 2,293,233 - DVU2197 0.50 -0.5 2,293,238 - DVU2197 0.51 -0.2 2,293,265 + DVU2197 0.54 -0.2 2,293,365 - DVU2197 0.65 -0.6 2,293,394 - DVU2197 0.68 -0.5 2,293,408 + DVU2197 0.69 +0.5 2,293,425 - DVU2197 0.71 -0.2 2,293,426 + DVU2197 0.71 -0.2 2,293,440 + DVU2197 0.73 +0.1 2,293,485 + DVU2197 0.78 +0.1 2,293,485 + DVU2197 0.78 -0.5 2,293,485 + DVU2197 0.78 +2.7 2,293,493 - DVU2197 0.78 +0.7 2,293,554 + DVU2197 0.85 +0.2 2,293,562 - DVU2197 0.86 +0.8 2,293,595 - DVU2197 0.89 -0.4 2,293,661 + +0.2 2,293,689 - +0.8 2,293,697 - -0.2 2,293,771 - -0.5 2,293,773 - +0.8 2,293,778 - -0.2 2,293,835 - -0.7 2,294,158 + -0.5 2,294,206 - -0.8 2,294,237 - -0.4 2,294,344 + DVU2198 0.64 -0.9 2,294,775 - +0.1 2,294,828 + +0.1 2,294,871 + DVU2200 0.15 -0.3 2,294,943 - DVU2200 0.34 -0.8 2,295,194 + -0.6 2,295,279 - -0.2 2,295,296 - -0.5 2,295,347 - -0.5 2,295,347 - -0.8 2,295,372 - -1.5
Or see this region's nucleotide sequence