Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1969

Experiment: MoLS4 without Folic with Casamino acids (vit. assay) 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1968 and DVU1969 are separated by 13 nucleotidesDVU1969 and DVU1970 are separated by 8 nucleotidesDVU1970 and DORF14650 are separated by 72 nucleotidesDORF14650 and DVU1971 are separated by 242 nucleotides DVU1968: DVU1968 - oxidoreductase, putative (TIGR), at 2,043,063 to 2,044,304 DVU1968 DVU1969: DVU1969 - hypothetical protein (TIGR), at 2,044,318 to 2,045,013 DVU1969 DVU1970: DVU1970 - response regulator (TIGR), at 2,045,022 to 2,045,429 DVU1970 DORF14650: DORF14650 - no description, at 2,045,502 to 2,045,651 DORF14650 DVU1971: DVU1971 - conserved domain protein (TIGR), at 2,045,894 to 2,046,457 DVU1971 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -2 -1 0 1 2at 2043.358 kb on + strand, within DVU1968at 2043.358 kb on + strand, within DVU1968at 2043.390 kb on + strand, within DVU1968at 2043.440 kb on - strand, within DVU1968at 2043.630 kb on + strand, within DVU1968at 2043.706 kb on - strand, within DVU1968at 2043.720 kb on + strand, within DVU1968at 2043.787 kb on + strand, within DVU1968at 2043.908 kb on + strand, within DVU1968at 2043.987 kb on + strand, within DVU1968at 2044.054 kb on + strand, within DVU1968at 2044.054 kb on + strand, within DVU1968at 2044.088 kb on - strand, within DVU1968at 2044.141 kb on + strand, within DVU1968at 2044.165 kb on + strand, within DVU1968at 2044.181 kb on + strandat 2044.216 kb on - strandat 2044.219 kb on + strandat 2044.221 kb on - strandat 2044.221 kb on - strandat 2044.221 kb on - strandat 2044.442 kb on + strand, within DVU1969at 2044.481 kb on + strand, within DVU1969at 2044.511 kb on - strand, within DVU1969at 2044.548 kb on + strand, within DVU1969at 2044.574 kb on + strand, within DVU1969at 2044.609 kb on + strand, within DVU1969at 2044.683 kb on + strand, within DVU1969at 2044.721 kb on + strand, within DVU1969at 2044.756 kb on + strand, within DVU1969at 2044.806 kb on - strand, within DVU1969at 2044.806 kb on - strand, within DVU1969at 2044.861 kb on - strand, within DVU1969at 2044.956 kb on + strandat 2044.956 kb on + strandat 2044.964 kb on - strandat 2045.008 kb on + strandat 2045.082 kb on + strand, within DVU1970at 2045.181 kb on + strand, within DVU1970at 2045.339 kb on - strand, within DVU1970at 2045.339 kb on - strand, within DVU1970at 2045.351 kb on + strand, within DVU1970at 2045.351 kb on + strand, within DVU1970at 2045.351 kb on + strand, within DVU1970at 2045.357 kb on - strand, within DVU1970at 2045.357 kb on - strand, within DVU1970at 2045.369 kb on - strand, within DVU1970at 2045.369 kb on - strand, within DVU1970at 2045.373 kb on + strand, within DVU1970at 2045.399 kb on + strandat 2045.444 kb on + strandat 2045.525 kb on + strand, within DORF14650at 2045.601 kb on - strand, within DORF14650at 2045.626 kb on + strand, within DORF14650at 2045.644 kb on - strandat 2045.655 kb on - strandat 2045.655 kb on - strandat 2045.689 kb on + strandat 2045.757 kb on + strandat 2045.764 kb on + strandat 2045.796 kb on + strandat 2045.804 kb on + strandat 2045.811 kb on - strandat 2045.867 kb on - strandat 2045.990 kb on - strand, within DVU1971

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without Folic with Casamino acids (vit. assay) 0.05%
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2,043,358 + DVU1968 0.24 -0.3
2,043,358 + DVU1968 0.24 +0.7
2,043,390 + DVU1968 0.26 -1.6
2,043,440 - DVU1968 0.30 +0.6
2,043,630 + DVU1968 0.46 -0.3
2,043,706 - DVU1968 0.52 +1.5
2,043,720 + DVU1968 0.53 -1.7
2,043,787 + DVU1968 0.58 -0.3
2,043,908 + DVU1968 0.68 -0.9
2,043,987 + DVU1968 0.74 +0.7
2,044,054 + DVU1968 0.80 -0.2
2,044,054 + DVU1968 0.80 -0.7
2,044,088 - DVU1968 0.83 +0.6
2,044,141 + DVU1968 0.87 -0.2
2,044,165 + DVU1968 0.89 +0.1
2,044,181 + -0.3
2,044,216 - -1.4
2,044,219 + -0.2
2,044,221 - +1.5
2,044,221 - -0.5
2,044,221 - -0.7
2,044,442 + DVU1969 0.18 -1.2
2,044,481 + DVU1969 0.23 -0.5
2,044,511 - DVU1969 0.28 -0.5
2,044,548 + DVU1969 0.33 -1.2
2,044,574 + DVU1969 0.37 -2.2
2,044,609 + DVU1969 0.42 -1.5
2,044,683 + DVU1969 0.52 -0.5
2,044,721 + DVU1969 0.58 +1.7
2,044,756 + DVU1969 0.63 +1.1
2,044,806 - DVU1969 0.70 -0.9
2,044,806 - DVU1969 0.70 +0.0
2,044,861 - DVU1969 0.78 -0.3
2,044,956 + +0.0
2,044,956 + -0.5
2,044,964 - +0.1
2,045,008 + -0.1
2,045,082 + DVU1970 0.15 -1.2
2,045,181 + DVU1970 0.39 -0.0
2,045,339 - DVU1970 0.78 +0.6
2,045,339 - DVU1970 0.78 -0.7
2,045,351 + DVU1970 0.81 -0.4
2,045,351 + DVU1970 0.81 -0.3
2,045,351 + DVU1970 0.81 -0.3
2,045,357 - DVU1970 0.82 -1.6
2,045,357 - DVU1970 0.82 -0.7
2,045,369 - DVU1970 0.85 -0.2
2,045,369 - DVU1970 0.85 -0.3
2,045,373 + DVU1970 0.86 -1.3
2,045,399 + -1.9
2,045,444 + -0.6
2,045,525 + DORF14650 0.15 +1.0
2,045,601 - DORF14650 0.66 +1.7
2,045,626 + DORF14650 0.83 -0.2
2,045,644 - +0.3
2,045,655 - -0.3
2,045,655 - +1.9
2,045,689 + -0.1
2,045,757 + -0.2
2,045,764 + -0.1
2,045,796 + +0.1
2,045,804 + +0.8
2,045,811 - -0.3
2,045,867 - -1.5
2,045,990 - DVU1971 0.17 -0.2

Or see this region's nucleotide sequence