Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1069
Experiment: MoLS4 without Folic with Casamino acids (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoLS4 without Folic with Casamino acids (vit. assay) 0.05% |
---|---|---|---|---|---|
remove | |||||
1,172,156 | - | DVU1068 | 0.18 | +0.6 | |
1,172,184 | + | DVU1068 | 0.21 | -1.2 | |
1,172,263 | + | DVU1068 | 0.28 | -1.4 | |
1,172,625 | + | DVU1068 | 0.62 | +0.0 | |
1,172,712 | - | DVU1068 | 0.70 | +0.0 | |
1,172,732 | + | DVU1068 | 0.72 | +0.6 | |
1,172,764 | + | DVU1068 | 0.75 | -0.1 | |
1,172,780 | - | DVU1068 | 0.77 | -0.2 | |
1,173,069 | - | +0.6 | |||
1,173,193 | - | DVU1069 | 0.18 | -0.1 | |
1,173,197 | - | DVU1069 | 0.19 | -2.3 | |
1,173,234 | + | DVU1069 | 0.23 | -0.7 | |
1,173,328 | - | DVU1069 | 0.33 | -1.0 | |
1,173,334 | - | DVU1069 | 0.34 | +1.1 | |
1,173,468 | - | DVU1069 | 0.48 | -2.9 | |
1,173,593 | + | DVU1069 | 0.62 | -0.5 | |
1,173,595 | + | DVU1069 | 0.62 | -0.2 | |
1,173,651 | + | DVU1069 | 0.68 | -0.8 | |
1,173,688 | + | DVU1069 | 0.72 | +0.6 | |
1,174,277 | + | rbsA | DVU1070 | 0.21 | -1.3 |
1,174,333 | + | rbsA | DVU1070 | 0.24 | +0.5 |
1,174,589 | + | rbsA | DVU1070 | 0.41 | +1.6 |
1,174,758 | + | rbsA | DVU1070 | 0.51 | -1.9 |
1,174,838 | - | rbsA | DVU1070 | 0.56 | +0.7 |
1,174,938 | + | rbsA | DVU1070 | 0.63 | -0.6 |
Or see this region's nucleotide sequence