Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22670 and BWI76_RS22675 overlap by 1 nucleotides BWI76_RS22675 and BWI76_RS22680 are separated by 19 nucleotides BWI76_RS22680 and BWI76_RS22685 are separated by 139 nucleotides BWI76_RS22685 and BWI76_RS22690 are separated by 53 nucleotides
BWI76_RS22670: BWI76_RS22670 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 4,724,903 to 4,725,382
_RS22670
BWI76_RS22675: BWI76_RS22675 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 4,725,382 to 4,726,092
_RS22675
BWI76_RS22680: BWI76_RS22680 - cell division protein FtsB, at 4,726,112 to 4,726,429
_RS22680
BWI76_RS22685: BWI76_RS22685 - hypothetical protein, at 4,726,569 to 4,726,895
_RS22685
BWI76_RS22690: BWI76_RS22690 - adenylyl-sulfate kinase, at 4,726,949 to 4,727,554
_RS22690
Position (kb) 4726
4727 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4726.585 kb on + strand at 4726.723 kb on + strand, within BWI76_RS22685 at 4726.723 kb on + strand, within BWI76_RS22685 at 4726.730 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.753 kb on + strand, within BWI76_RS22685 at 4726.776 kb on - strand, within BWI76_RS22685 at 4726.817 kb on + strand, within BWI76_RS22685 at 4726.909 kb on + strand at 4726.964 kb on - strand at 4726.980 kb on - strand at 4726.980 kb on - strand at 4727.091 kb on + strand, within BWI76_RS22690 at 4727.106 kb on + strand, within BWI76_RS22690 at 4727.212 kb on + strand, within BWI76_RS22690 at 4727.279 kb on - strand, within BWI76_RS22690 at 4727.339 kb on + strand, within BWI76_RS22690
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x remove 4,726,585 + +0.5 4,726,723 + BWI76_RS22685 0.47 -0.8 4,726,723 + BWI76_RS22685 0.47 -0.8 4,726,730 - BWI76_RS22685 0.49 +1.0 4,726,731 - BWI76_RS22685 0.50 -0.4 4,726,731 - BWI76_RS22685 0.50 +2.3 4,726,731 - BWI76_RS22685 0.50 +1.3 4,726,731 - BWI76_RS22685 0.50 -1.0 4,726,753 + BWI76_RS22685 0.56 +1.6 4,726,776 - BWI76_RS22685 0.63 +1.0 4,726,817 + BWI76_RS22685 0.76 +0.1 4,726,909 + -0.2 4,726,964 - -2.8 4,726,980 - -1.2 4,726,980 - -1.6 4,727,091 + BWI76_RS22690 0.23 +1.8 4,727,106 + BWI76_RS22690 0.26 +1.0 4,727,212 + BWI76_RS22690 0.43 -0.6 4,727,279 - BWI76_RS22690 0.54 +1.0 4,727,339 + BWI76_RS22690 0.64 -0.3
Or see this region's nucleotide sequence