Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14735

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x
3,091,412	+				-0.2
3,091,412	+				-0.4
3,091,420	-				+1.4
3,091,420	-				+0.1
3,091,420	-				+0.7
3,091,420	-				+0.5
3,091,496	-		BWI76_RS14725	0.21	-0.1
3,091,642	-		BWI76_RS14725	0.52	+0.5
3,091,752	+		BWI76_RS14725	0.76	-2.0
3,091,752	+		BWI76_RS14725	0.76	-0.3
3,091,760	-		BWI76_RS14725	0.77	+0.2
3,091,942	+				-0.5
3,092,064	-		BWI76_RS14730	0.58	+0.0
3,092,066	+		BWI76_RS14730	0.59	+0.6
3,092,068	-		BWI76_RS14730	0.59	-2.1
3,092,081	+		BWI76_RS14730	0.65	-0.3
3,092,112	+		BWI76_RS14730	0.78	-0.1
3,092,120	-		BWI76_RS14730	0.81	-0.0
3,092,217	-				+0.4
3,092,288	+				+0.5
3,092,296	-				+0.4
3,092,318	-				-1.4
3,092,610	+		BWI76_RS14735	0.50	-0.9
3,092,753	-		BWI76_RS14735	0.71	-0.9
3,092,782	-		BWI76_RS14735	0.76	-0.6
3,093,271	+		BWI76_RS14740	0.28	-0.4
3,093,381	+				-0.0
3,093,389	-		BWI76_RS14740	0.42	-0.4
3,093,542	-		BWI76_RS14740	0.59	-0.3
3,093,756	-		BWI76_RS14740	0.83	+1.4
3,093,774	-		BWI76_RS14740	0.85	-1.0