Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03810 and BWI76_RS03815 are separated by 11 nucleotides BWI76_RS03815 and BWI76_RS03820 are separated by 109 nucleotides
BWI76_RS03810: BWI76_RS03810 - GTPase, at 787,632 to 788,588
_RS03810
BWI76_RS03815: BWI76_RS03815 - hypothetical protein, at 788,600 to 788,803
_RS03815
BWI76_RS03820: BWI76_RS03820 - carbon starvation protein A, at 788,913 to 791,063
_RS03820
Position (kb) 788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.738 kb on - strand, within BWI76_RS03810 at 787.850 kb on + strand, within BWI76_RS03810 at 788.073 kb on - strand, within BWI76_RS03810 at 788.075 kb on - strand, within BWI76_RS03810 at 788.199 kb on + strand, within BWI76_RS03810 at 788.286 kb on - strand, within BWI76_RS03810 at 788.320 kb on - strand, within BWI76_RS03810 at 788.365 kb on + strand, within BWI76_RS03810 at 788.413 kb on + strand, within BWI76_RS03810 at 788.421 kb on - strand, within BWI76_RS03810 at 788.423 kb on + strand, within BWI76_RS03810 at 788.524 kb on - strand at 788.590 kb on - strand at 788.697 kb on + strand, within BWI76_RS03815 at 788.707 kb on + strand, within BWI76_RS03815 at 788.831 kb on + strand at 788.844 kb on + strand at 788.852 kb on - strand at 788.891 kb on - strand at 788.992 kb on - strand at 789.068 kb on - strand at 789.076 kb on + strand at 789.199 kb on + strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.207 kb on - strand, within BWI76_RS03820 at 789.240 kb on - strand, within BWI76_RS03820 at 789.302 kb on + strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.310 kb on - strand, within BWI76_RS03820 at 789.518 kb on + strand, within BWI76_RS03820 at 789.681 kb on + strand, within BWI76_RS03820 at 789.689 kb on - strand, within BWI76_RS03820
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x remove 787,738 - BWI76_RS03810 0.11 +2.1 787,850 + BWI76_RS03810 0.23 +1.1 788,073 - BWI76_RS03810 0.46 +0.9 788,075 - BWI76_RS03810 0.46 -0.5 788,199 + BWI76_RS03810 0.59 +0.8 788,286 - BWI76_RS03810 0.68 +1.1 788,320 - BWI76_RS03810 0.72 +0.0 788,365 + BWI76_RS03810 0.77 -0.8 788,413 + BWI76_RS03810 0.82 -0.6 788,421 - BWI76_RS03810 0.82 +0.1 788,423 + BWI76_RS03810 0.83 -0.9 788,524 - -1.3 788,590 - -0.1 788,697 + BWI76_RS03815 0.48 +1.1 788,707 + BWI76_RS03815 0.52 +1.1 788,831 + +0.1 788,844 + +0.6 788,852 - -3.3 788,891 - -0.8 788,992 - -1.9 789,068 - -1.3 789,076 + +0.6 789,199 + BWI76_RS03820 0.13 -1.4 789,207 - BWI76_RS03820 0.14 +2.1 789,207 - BWI76_RS03820 0.14 +0.1 789,207 - BWI76_RS03820 0.14 +0.5 789,240 - BWI76_RS03820 0.15 +0.9 789,302 + BWI76_RS03820 0.18 +0.7 789,310 - BWI76_RS03820 0.18 +0.9 789,310 - BWI76_RS03820 0.18 -0.0 789,310 - BWI76_RS03820 0.18 -0.5 789,518 + BWI76_RS03820 0.28 -1.3 789,681 + BWI76_RS03820 0.36 +0.7 789,689 - BWI76_RS03820 0.36 -0.3
Or see this region's nucleotide sequence