Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03755 and BWI76_RS03760 overlap by 1 nucleotides BWI76_RS03760 and BWI76_RS03765 are separated by 10 nucleotides
BWI76_RS03755: BWI76_RS03755 - phosphoadenosine phosphosulfate reductase, at 777,414 to 778,625
_RS03755
BWI76_RS03760: BWI76_RS03760 - hypothetical protein, at 778,625 to 779,251
_RS03760
BWI76_RS03765: BWI76_RS03765 - MFS transporter, at 779,262 to 780,503
_RS03765
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 777.653 kb on + strand, within BWI76_RS03755 at 777.655 kb on + strand, within BWI76_RS03755 at 777.655 kb on + strand, within BWI76_RS03755 at 777.663 kb on - strand, within BWI76_RS03755 at 777.663 kb on - strand, within BWI76_RS03755 at 777.663 kb on - strand, within BWI76_RS03755 at 777.705 kb on + strand, within BWI76_RS03755 at 777.707 kb on - strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755 at 777.712 kb on + strand, within BWI76_RS03755 at 777.754 kb on + strand, within BWI76_RS03755 at 777.769 kb on + strand, within BWI76_RS03755 at 777.944 kb on - strand, within BWI76_RS03755 at 778.013 kb on + strand, within BWI76_RS03755 at 778.034 kb on - strand, within BWI76_RS03755 at 778.079 kb on + strand, within BWI76_RS03755 at 778.089 kb on - strand, within BWI76_RS03755 at 778.174 kb on + strand, within BWI76_RS03755 at 778.225 kb on - strand, within BWI76_RS03755 at 778.279 kb on + strand, within BWI76_RS03755 at 778.287 kb on - strand, within BWI76_RS03755 at 778.559 kb on + strand at 778.566 kb on - strand at 778.568 kb on - strand at 778.576 kb on - strand at 778.627 kb on - strand at 778.724 kb on - strand, within BWI76_RS03760 at 778.806 kb on + strand, within BWI76_RS03760 at 778.806 kb on + strand, within BWI76_RS03760 at 778.814 kb on - strand, within BWI76_RS03760 at 778.874 kb on - strand, within BWI76_RS03760 at 778.933 kb on + strand, within BWI76_RS03760 at 778.973 kb on + strand, within BWI76_RS03760 at 779.072 kb on + strand, within BWI76_RS03760 at 779.121 kb on + strand, within BWI76_RS03760 at 779.242 kb on - strand at 779.622 kb on + strand, within BWI76_RS03765 at 779.688 kb on - strand, within BWI76_RS03765 at 779.695 kb on - strand, within BWI76_RS03765 at 779.877 kb on + strand, within BWI76_RS03765 at 779.908 kb on - strand, within BWI76_RS03765 at 780.009 kb on + strand, within BWI76_RS03765 at 780.017 kb on - strand, within BWI76_RS03765 at 780.151 kb on + strand, within BWI76_RS03765 at 780.180 kb on + strand, within BWI76_RS03765 at 780.180 kb on + strand, within BWI76_RS03765 at 780.224 kb on + strand, within BWI76_RS03765 at 780.224 kb on + strand, within BWI76_RS03765 at 780.232 kb on - strand, within BWI76_RS03765 at 780.241 kb on + strand, within BWI76_RS03765 at 780.251 kb on + strand, within BWI76_RS03765
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x remove 777,653 + BWI76_RS03755 0.20 +0.7 777,655 + BWI76_RS03755 0.20 +0.8 777,655 + BWI76_RS03755 0.20 -3.1 777,663 - BWI76_RS03755 0.21 +0.1 777,663 - BWI76_RS03755 0.21 -2.6 777,663 - BWI76_RS03755 0.21 -1.4 777,705 + BWI76_RS03755 0.24 +1.2 777,707 - BWI76_RS03755 0.24 -1.2 777,712 + BWI76_RS03755 0.25 +0.7 777,712 + BWI76_RS03755 0.25 +0.7 777,712 + BWI76_RS03755 0.25 +0.1 777,712 + BWI76_RS03755 0.25 +0.7 777,754 + BWI76_RS03755 0.28 +0.3 777,769 + BWI76_RS03755 0.29 -2.6 777,944 - BWI76_RS03755 0.44 +0.6 778,013 + BWI76_RS03755 0.49 +1.1 778,034 - BWI76_RS03755 0.51 +1.3 778,079 + BWI76_RS03755 0.55 +1.1 778,089 - BWI76_RS03755 0.56 -0.5 778,174 + BWI76_RS03755 0.63 +0.4 778,225 - BWI76_RS03755 0.67 +1.4 778,279 + BWI76_RS03755 0.71 +0.9 778,287 - BWI76_RS03755 0.72 +0.1 778,559 + +0.6 778,566 - +1.1 778,568 - -0.8 778,576 - -0.1 778,627 - +0.1 778,724 - BWI76_RS03760 0.16 +0.7 778,806 + BWI76_RS03760 0.29 +1.8 778,806 + BWI76_RS03760 0.29 -2.3 778,814 - BWI76_RS03760 0.30 +0.4 778,874 - BWI76_RS03760 0.40 +2.2 778,933 + BWI76_RS03760 0.49 -0.4 778,973 + BWI76_RS03760 0.56 +0.8 779,072 + BWI76_RS03760 0.71 +0.9 779,121 + BWI76_RS03760 0.79 +1.0 779,242 - +0.3 779,622 + BWI76_RS03765 0.29 +0.2 779,688 - BWI76_RS03765 0.34 +1.3 779,695 - BWI76_RS03765 0.35 -1.1 779,877 + BWI76_RS03765 0.50 +0.6 779,908 - BWI76_RS03765 0.52 -0.5 780,009 + BWI76_RS03765 0.60 +0.8 780,017 - BWI76_RS03765 0.61 -0.1 780,151 + BWI76_RS03765 0.72 -0.9 780,180 + BWI76_RS03765 0.74 -0.1 780,180 + BWI76_RS03765 0.74 -1.0 780,224 + BWI76_RS03765 0.77 +0.4 780,224 + BWI76_RS03765 0.77 +0.1 780,232 - BWI76_RS03765 0.78 -0.0 780,241 + BWI76_RS03765 0.79 +0.1 780,251 + BWI76_RS03765 0.80 -0.3
Or see this region's nucleotide sequence