Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01670 and BWI76_RS01675 are separated by 13 nucleotides BWI76_RS01675 and BWI76_RS01680 are separated by 0 nucleotides BWI76_RS01680 and BWI76_RS01685 are separated by 196 nucleotides
BWI76_RS01670: BWI76_RS01670 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 339,957 to 341,699
_RS01670
BWI76_RS01675: BWI76_RS01675 - putative cytoplasmic protein, at 341,713 to 342,126
_RS01675
BWI76_RS01680: BWI76_RS01680 - transcriptional regulator IclR, at 342,127 to 342,954
_RS01680
BWI76_RS01685: BWI76_RS01685 - methionine synthase, at 343,151 to 346,834
_RS01685
Position (kb) 342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 341.190 kb on - strand, within BWI76_RS01670 at 341.238 kb on - strand, within BWI76_RS01670 at 341.266 kb on + strand, within BWI76_RS01670 at 341.287 kb on + strand, within BWI76_RS01670 at 341.323 kb on + strand, within BWI76_RS01670 at 341.440 kb on + strand, within BWI76_RS01670 at 341.479 kb on - strand, within BWI76_RS01670 at 341.710 kb on + strand at 341.718 kb on - strand at 341.749 kb on - strand at 341.856 kb on - strand at 341.890 kb on - strand, within BWI76_RS01675 at 342.135 kb on + strand at 342.297 kb on - strand, within BWI76_RS01680 at 342.302 kb on - strand, within BWI76_RS01680 at 342.323 kb on - strand, within BWI76_RS01680 at 342.379 kb on - strand, within BWI76_RS01680 at 342.413 kb on - strand, within BWI76_RS01680 at 342.525 kb on + strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.533 kb on - strand, within BWI76_RS01680 at 342.773 kb on + strand, within BWI76_RS01680 at 343.064 kb on - strand at 343.148 kb on + strand at 343.148 kb on + strand at 343.148 kb on + strand at 343.332 kb on - strand at 343.406 kb on - strand at 343.456 kb on + strand at 343.461 kb on + strand at 343.498 kb on + strand at 343.606 kb on + strand, within BWI76_RS01685 at 343.627 kb on + strand, within BWI76_RS01685 at 343.646 kb on - strand, within BWI76_RS01685 at 343.880 kb on + strand, within BWI76_RS01685 at 343.930 kb on - strand, within BWI76_RS01685
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x remove 341,190 - BWI76_RS01670 0.71 +0.1 341,238 - BWI76_RS01670 0.73 +0.7 341,266 + BWI76_RS01670 0.75 -1.2 341,287 + BWI76_RS01670 0.76 -0.1 341,323 + BWI76_RS01670 0.78 +0.2 341,440 + BWI76_RS01670 0.85 +0.9 341,479 - BWI76_RS01670 0.87 +0.1 341,710 + +0.2 341,718 - +0.3 341,749 - +0.5 341,856 - +1.1 341,890 - BWI76_RS01675 0.43 +0.6 342,135 + +0.6 342,297 - BWI76_RS01680 0.21 -0.9 342,302 - BWI76_RS01680 0.21 -1.2 342,323 - BWI76_RS01680 0.24 -1.2 342,379 - BWI76_RS01680 0.30 -0.8 342,413 - BWI76_RS01680 0.35 -0.4 342,525 + BWI76_RS01680 0.48 -1.7 342,533 - BWI76_RS01680 0.49 -0.7 342,533 - BWI76_RS01680 0.49 -2.8 342,773 + BWI76_RS01680 0.78 -0.1 343,064 - +0.6 343,148 + -0.5 343,148 + +0.6 343,148 + -0.5 343,332 - +1.3 343,406 - +0.2 343,456 + -0.2 343,461 + +0.1 343,498 + +0.2 343,606 + BWI76_RS01685 0.12 -0.3 343,627 + BWI76_RS01685 0.13 +1.7 343,646 - BWI76_RS01685 0.13 +0.6 343,880 + BWI76_RS01685 0.20 -3.1 343,930 - BWI76_RS01685 0.21 +0.1
Or see this region's nucleotide sequence