Strain Fitness in Shewanella oneidensis MR-1 around SO1526

Experiment: fumarate electron acceptor; flight

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdxs and ispA are separated by 21 nucleotidesispA and SO_1527 overlap by 7 nucleotidesSO_1527 and pomA are separated by 314 nucleotides SO1525: dxs - deoxyxylulose-5-phosphate synthase (NCBI ptt file), at 1,601,183 to 1,603,051 dxs SO1526: ispA - geranyltranstransferase (NCBI ptt file), at 1,603,073 to 1,603,954 ispA SO_1527: SO_1527 - no description, at 1,603,948 to 1,604,196 _1527 SO1529: pomA - chemotaxis motA protein (NCBI ptt file), at 1,604,511 to 1,605,278 pomA Position (kb) 1603 1604Strain fitness (log2 ratio) -3 -2 -1 0 1at 1604.042 kb on + strand, within SO_1527at 1604.129 kb on - strand, within SO_1527at 1604.208 kb on + strandat 1604.235 kb on - strandat 1604.347 kb on - strandat 1604.417 kb on + strandat 1604.419 kb on - strandat 1604.431 kb on + strandat 1604.431 kb on + strandat 1604.439 kb on - strandat 1604.482 kb on - strandat 1604.553 kb on - strandat 1604.573 kb on + strandat 1604.735 kb on - strand, within pomAat 1604.901 kb on - strand, within pomA

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor; flight
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1,604,042 + SO_1527 0.38 +1.1
1,604,129 - SO_1527 0.73 -2.3
1,604,208 + +1.1
1,604,235 - -0.2
1,604,347 - +0.8
1,604,417 + -0.1
1,604,419 - +0.2
1,604,431 + -0.0
1,604,431 + +0.8
1,604,439 - +1.4
1,604,482 - -3.0
1,604,553 - -0.9
1,604,573 + -0.3
1,604,735 - pomA SO1529 0.29 -0.2
1,604,901 - pomA SO1529 0.51 -0.9

Or see this region's nucleotide sequence