Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24805 and BWI76_RS24810 are separated by 0 nucleotides BWI76_RS24810 and BWI76_RS24820 are separated by 412 nucleotides BWI76_RS24820 and BWI76_RS24825 are separated by 65 nucleotides BWI76_RS24825 and BWI76_RS24830 are separated by 28 nucleotides
BWI76_RS24805: BWI76_RS24805 - hypothetical protein, at 5,170,237 to 5,170,623
_RS24805
BWI76_RS24810: BWI76_RS24810 - hypothetical protein, at 5,170,624 to 5,171,010
_RS24810
BWI76_RS24820: BWI76_RS24820 - glycerate 2-kinase, at 5,171,423 to 5,172,568
_RS24820
BWI76_RS24825: BWI76_RS24825 - 2-hydroxy-3-oxopropionate reductase, at 5,172,634 to 5,173,524
_RS24825
BWI76_RS24830: BWI76_RS24830 - 5-keto-4-deoxy-D-glucarate aldolase, at 5,173,553 to 5,174,323
_RS24830
Position (kb) 5171
5172
5173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5170.816 kb on + strand, within BWI76_RS24810 at 5170.823 kb on + strand, within BWI76_RS24810 at 5171.427 kb on - strand at 5171.463 kb on + strand at 5171.521 kb on + strand at 5171.529 kb on - strand at 5171.529 kb on - strand at 5171.556 kb on + strand, within BWI76_RS24820 at 5172.133 kb on - strand, within BWI76_RS24820 at 5172.248 kb on - strand, within BWI76_RS24820 at 5172.257 kb on + strand, within BWI76_RS24820 at 5172.271 kb on + strand, within BWI76_RS24820 at 5172.394 kb on - strand, within BWI76_RS24820 at 5172.511 kb on - strand at 5172.535 kb on + strand at 5172.604 kb on - strand at 5172.610 kb on - strand at 5172.627 kb on + strand at 5172.650 kb on + strand at 5172.892 kb on - strand, within BWI76_RS24825 at 5173.072 kb on - strand, within BWI76_RS24825 at 5173.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM remove 5,170,816 + BWI76_RS24810 0.50 +0.1 5,170,823 + BWI76_RS24810 0.51 +0.5 5,171,427 - +0.3 5,171,463 + -0.3 5,171,521 + -0.2 5,171,529 - +0.9 5,171,529 - -0.0 5,171,556 + BWI76_RS24820 0.12 +0.4 5,172,133 - BWI76_RS24820 0.62 +0.3 5,172,248 - BWI76_RS24820 0.72 -0.7 5,172,257 + BWI76_RS24820 0.73 -0.7 5,172,271 + BWI76_RS24820 0.74 -0.5 5,172,394 - BWI76_RS24820 0.85 -1.8 5,172,511 - +0.5 5,172,535 + -1.5 5,172,604 - -1.7 5,172,610 - -1.4 5,172,627 + -1.3 5,172,650 + -0.0 5,172,892 - BWI76_RS24825 0.29 +1.8 5,173,072 - BWI76_RS24825 0.49 +0.9 5,173,533 - -1.8
Or see this region's nucleotide sequence