Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04460 and BWI76_RS04465 are separated by 457 nucleotides BWI76_RS04465 and BWI76_RS04470 are separated by 18 nucleotides
BWI76_RS04460: BWI76_RS04460 - 4-hydroxy-tetrahydrodipicolinate reductase, at 921,267 to 922,088
_RS04460
BWI76_RS04465: BWI76_RS04465 - carbamoyl-phosphate synthase small subunit, at 922,546 to 923,694
_RS04465
BWI76_RS04470: BWI76_RS04470 - carbamoyl phosphate synthase large subunit, at 923,713 to 926,937
_RS04470
Position (kb) 922
923
924 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 922.434 kb on + strand at 922.440 kb on - strand at 922.440 kb on - strand at 922.599 kb on + strand at 922.828 kb on + strand, within BWI76_RS04465 at 922.836 kb on + strand, within BWI76_RS04465 at 922.836 kb on - strand, within BWI76_RS04465 at 922.897 kb on - strand, within BWI76_RS04465 at 923.052 kb on - strand, within BWI76_RS04465 at 923.206 kb on + strand, within BWI76_RS04465 at 923.623 kb on - strand at 923.628 kb on - strand at 923.794 kb on - strand at 923.808 kb on + strand at 923.816 kb on - strand at 923.855 kb on + strand at 923.862 kb on + strand at 923.879 kb on - strand at 923.995 kb on + strand at 923.995 kb on + strand at 924.003 kb on - strand at 924.256 kb on + strand, within BWI76_RS04470 at 924.264 kb on - strand at 924.575 kb on - strand, within BWI76_RS04470
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM remove 922,434 + -1.0 922,440 - -2.1 922,440 - -1.2 922,599 + -4.0 922,828 + BWI76_RS04465 0.25 -3.2 922,836 + BWI76_RS04465 0.25 -5.2 922,836 - BWI76_RS04465 0.25 -4.7 922,897 - BWI76_RS04465 0.31 -3.2 923,052 - BWI76_RS04465 0.44 -3.8 923,206 + BWI76_RS04465 0.57 -0.8 923,623 - -2.5 923,628 - -3.5 923,794 - -4.4 923,808 + -4.0 923,816 - +0.8 923,855 + -5.0 923,862 + -4.2 923,879 - -3.4 923,995 + -2.2 923,995 + +0.8 924,003 - -2.6 924,256 + BWI76_RS04470 0.17 -2.0 924,264 - -1.2 924,575 - BWI76_RS04470 0.27 -4.5
Or see this region's nucleotide sequence