Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4071

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4070 and Psest_4071 are separated by 118 nucleotidesPsest_4071 and Psest_4072 are separated by 69 nucleotides Psest_4070: Psest_4070 - PAS domain S-box, at 4,240,228 to 4,242,720 _4070 Psest_4071: Psest_4071 - 4-hydroxyphenylpyruvate dioxygenase and related hemolysins, at 4,242,839 to 4,244,764 _4071 Psest_4072: Psest_4072 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 4,244,834 to 4,247,566 _4072 Position (kb) 4242 4243 4244 4245Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4241.936 kb on + strand, within Psest_4070at 4242.083 kb on + strand, within Psest_4070at 4242.084 kb on - strand, within Psest_4070at 4242.084 kb on - strand, within Psest_4070at 4242.084 kb on - strand, within Psest_4070at 4242.084 kb on - strand, within Psest_4070at 4242.137 kb on + strand, within Psest_4070at 4242.137 kb on + strand, within Psest_4070at 4242.137 kb on + strand, within Psest_4070at 4242.138 kb on - strand, within Psest_4070at 4242.140 kb on + strand, within Psest_4070at 4242.140 kb on + strand, within Psest_4070at 4242.140 kb on + strand, within Psest_4070at 4242.140 kb on + strand, within Psest_4070at 4242.140 kb on + strand, within Psest_4070at 4242.140 kb on + strand, within Psest_4070at 4242.141 kb on - strand, within Psest_4070at 4242.141 kb on - strand, within Psest_4070at 4242.141 kb on - strand, within Psest_4070at 4242.141 kb on - strand, within Psest_4070at 4242.141 kb on - strand, within Psest_4070at 4242.149 kb on + strand, within Psest_4070at 4242.160 kb on - strand, within Psest_4070at 4242.160 kb on - strand, within Psest_4070at 4242.176 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.203 kb on + strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.204 kb on - strand, within Psest_4070at 4242.236 kb on + strand, within Psest_4070at 4242.236 kb on + strand, within Psest_4070at 4242.236 kb on + strand, within Psest_4070at 4242.236 kb on + strand, within Psest_4070at 4242.237 kb on - strand, within Psest_4070at 4242.351 kb on - strand, within Psest_4070at 4242.351 kb on - strand, within Psest_4070at 4242.568 kb on + strandat 4242.569 kb on - strandat 4242.569 kb on - strandat 4242.614 kb on + strandat 4242.614 kb on + strandat 4242.614 kb on + strandat 4242.615 kb on - strandat 4242.615 kb on - strandat 4242.615 kb on - strandat 4242.761 kb on + strandat 4242.784 kb on + strandat 4242.784 kb on + strandat 4242.784 kb on + strandat 4242.785 kb on - strandat 4242.785 kb on - strandat 4242.817 kb on + strandat 4242.998 kb on - strandat 4242.998 kb on - strandat 4242.999 kb on + strandat 4242.999 kb on + strandat 4242.999 kb on + strandat 4243.000 kb on - strandat 4243.000 kb on - strandat 4243.000 kb on - strandat 4243.038 kb on + strand, within Psest_4071at 4243.039 kb on - strand, within Psest_4071at 4243.050 kb on + strand, within Psest_4071at 4243.051 kb on - strand, within Psest_4071at 4243.111 kb on - strand, within Psest_4071at 4243.113 kb on + strand, within Psest_4071at 4243.113 kb on + strand, within Psest_4071at 4243.113 kb on + strand, within Psest_4071at 4243.113 kb on + strand, within Psest_4071at 4243.113 kb on + strand, within Psest_4071at 4243.113 kb on + strand, within Psest_4071at 4243.114 kb on - strand, within Psest_4071at 4243.114 kb on - strand, within Psest_4071at 4243.114 kb on - strand, within Psest_4071at 4243.114 kb on - strand, within Psest_4071at 4243.222 kb on - strand, within Psest_4071at 4243.383 kb on + strand, within Psest_4071at 4243.497 kb on + strand, within Psest_4071at 4243.497 kb on + strand, within Psest_4071at 4243.497 kb on + strand, within Psest_4071at 4243.497 kb on + strand, within Psest_4071at 4243.498 kb on - strand, within Psest_4071at 4243.498 kb on - strand, within Psest_4071at 4243.498 kb on - strand, within Psest_4071at 4243.498 kb on - strand, within Psest_4071at 4243.498 kb on - strand, within Psest_4071at 4243.498 kb on - strand, within Psest_4071at 4243.533 kb on + strand, within Psest_4071at 4243.701 kb on + strand, within Psest_4071at 4243.701 kb on + strand, within Psest_4071at 4243.701 kb on + strand, within Psest_4071at 4243.701 kb on + strand, within Psest_4071at 4243.701 kb on + strand, within Psest_4071at 4243.701 kb on + strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.702 kb on - strand, within Psest_4071at 4243.720 kb on - strand, within Psest_4071at 4244.045 kb on + strand, within Psest_4071at 4244.046 kb on - strand, within Psest_4071at 4244.046 kb on - strand, within Psest_4071at 4244.046 kb on - strand, within Psest_4071at 4244.652 kb on + strandat 4244.770 kb on + strandat 4244.958 kb on + strandat 4244.958 kb on + strandat 4244.959 kb on - strandat 4244.997 kb on + strandat 4244.998 kb on - strandat 4245.042 kb on + strandat 4245.042 kb on + strandat 4245.042 kb on + strandat 4245.042 kb on + strandat 4245.043 kb on - strandat 4245.043 kb on - strandat 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.057 kb on + strandat 4245.058 kb on - strandat 4245.058 kb on - strandat 4245.058 kb on - strandat 4245.058 kb on - strandat 4245.090 kb on + strandat 4245.112 kb on - strand, within Psest_4072at 4245.112 kb on - strand, within Psest_4072at 4245.288 kb on + strand, within Psest_4072at 4245.289 kb on - strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.303 kb on + strand, within Psest_4072at 4245.304 kb on - strand, within Psest_4072at 4245.304 kb on - strand, within Psest_4072at 4245.304 kb on - strand, within Psest_4072at 4245.308 kb on - strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.630 kb on + strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072at 4245.631 kb on - strand, within Psest_4072

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,241,936 + Psest_4070 0.69 +1.0
4,242,083 + Psest_4070 0.74 -0.5
4,242,084 - Psest_4070 0.74 +0.1
4,242,084 - Psest_4070 0.74 -1.3
4,242,084 - Psest_4070 0.74 -1.0
4,242,084 - Psest_4070 0.74 -0.1
4,242,137 + Psest_4070 0.77 -0.2
4,242,137 + Psest_4070 0.77 -0.5
4,242,137 + Psest_4070 0.77 +0.3
4,242,138 - Psest_4070 0.77 +0.3
4,242,140 + Psest_4070 0.77 -1.1
4,242,140 + Psest_4070 0.77 +1.6
4,242,140 + Psest_4070 0.77 -0.9
4,242,140 + Psest_4070 0.77 -0.3
4,242,140 + Psest_4070 0.77 -0.3
4,242,140 + Psest_4070 0.77 +1.3
4,242,141 - Psest_4070 0.77 +0.6
4,242,141 - Psest_4070 0.77 -0.1
4,242,141 - Psest_4070 0.77 +1.3
4,242,141 - Psest_4070 0.77 +2.9
4,242,141 - Psest_4070 0.77 -1.4
4,242,149 + Psest_4070 0.77 -0.4
4,242,160 - Psest_4070 0.77 -0.2
4,242,160 - Psest_4070 0.77 +0.3
4,242,176 + Psest_4070 0.78 +0.3
4,242,203 + Psest_4070 0.79 +1.7
4,242,203 + Psest_4070 0.79 -1.3
4,242,203 + Psest_4070 0.79 +0.4
4,242,203 + Psest_4070 0.79 -0.5
4,242,203 + Psest_4070 0.79 +0.8
4,242,203 + Psest_4070 0.79 -1.7
4,242,203 + Psest_4070 0.79 -1.3
4,242,203 + Psest_4070 0.79 -0.4
4,242,203 + Psest_4070 0.79 +1.7
4,242,203 + Psest_4070 0.79 +0.3
4,242,204 - Psest_4070 0.79 +0.2
4,242,204 - Psest_4070 0.79 -1.9
4,242,204 - Psest_4070 0.79 -1.3
4,242,204 - Psest_4070 0.79 +1.0
4,242,204 - Psest_4070 0.79 +0.8
4,242,204 - Psest_4070 0.79 -0.2
4,242,204 - Psest_4070 0.79 +1.3
4,242,204 - Psest_4070 0.79 -1.2
4,242,236 + Psest_4070 0.81 -0.6
4,242,236 + Psest_4070 0.81 +0.6
4,242,236 + Psest_4070 0.81 -0.3
4,242,236 + Psest_4070 0.81 -0.3
4,242,237 - Psest_4070 0.81 -0.1
4,242,351 - Psest_4070 0.85 -0.8
4,242,351 - Psest_4070 0.85 -0.9
4,242,568 + -2.1
4,242,569 - -2.7
4,242,569 - -0.9
4,242,614 + +0.9
4,242,614 + +1.2
4,242,614 + -0.4
4,242,615 - +0.0
4,242,615 - -0.7
4,242,615 - -0.5
4,242,761 + -0.2
4,242,784 + +1.0
4,242,784 + +0.3
4,242,784 + +1.3
4,242,785 - -0.5
4,242,785 - -0.1
4,242,817 + -0.1
4,242,998 - +2.9
4,242,998 - -0.5
4,242,999 + +1.6
4,242,999 + +1.3
4,242,999 + +2.7
4,243,000 - +1.9
4,243,000 - +0.9
4,243,000 - +2.0
4,243,038 + Psest_4071 0.10 +0.3
4,243,039 - Psest_4071 0.10 -0.2
4,243,050 + Psest_4071 0.11 +0.8
4,243,051 - Psest_4071 0.11 +1.4
4,243,111 - Psest_4071 0.14 +2.3
4,243,113 + Psest_4071 0.14 +1.5
4,243,113 + Psest_4071 0.14 +0.7
4,243,113 + Psest_4071 0.14 +0.2
4,243,113 + Psest_4071 0.14 +1.3
4,243,113 + Psest_4071 0.14 +1.5
4,243,113 + Psest_4071 0.14 +0.3
4,243,114 - Psest_4071 0.14 +1.7
4,243,114 - Psest_4071 0.14 +1.7
4,243,114 - Psest_4071 0.14 -0.9
4,243,114 - Psest_4071 0.14 +1.7
4,243,222 - Psest_4071 0.20 -0.3
4,243,383 + Psest_4071 0.28 +1.4
4,243,497 + Psest_4071 0.34 +2.1
4,243,497 + Psest_4071 0.34 +1.8
4,243,497 + Psest_4071 0.34 +0.0
4,243,497 + Psest_4071 0.34 -0.2
4,243,498 - Psest_4071 0.34 +0.7
4,243,498 - Psest_4071 0.34 +2.6
4,243,498 - Psest_4071 0.34 -0.4
4,243,498 - Psest_4071 0.34 -0.5
4,243,498 - Psest_4071 0.34 +0.5
4,243,498 - Psest_4071 0.34 +0.8
4,243,533 + Psest_4071 0.36 +2.6
4,243,701 + Psest_4071 0.45 +2.9
4,243,701 + Psest_4071 0.45 +1.2
4,243,701 + Psest_4071 0.45 +1.1
4,243,701 + Psest_4071 0.45 +1.8
4,243,701 + Psest_4071 0.45 -1.2
4,243,701 + Psest_4071 0.45 -0.1
4,243,702 - Psest_4071 0.45 +1.7
4,243,702 - Psest_4071 0.45 +1.2
4,243,702 - Psest_4071 0.45 +2.5
4,243,702 - Psest_4071 0.45 +1.4
4,243,702 - Psest_4071 0.45 -0.2
4,243,702 - Psest_4071 0.45 +2.1
4,243,702 - Psest_4071 0.45 +0.2
4,243,702 - Psest_4071 0.45 +1.1
4,243,702 - Psest_4071 0.45 +1.9
4,243,702 - Psest_4071 0.45 +0.9
4,243,720 - Psest_4071 0.46 +0.2
4,244,045 + Psest_4071 0.63 +1.6
4,244,046 - Psest_4071 0.63 +0.3
4,244,046 - Psest_4071 0.63 +1.3
4,244,046 - Psest_4071 0.63 +0.9
4,244,652 + +1.5
4,244,770 + +1.0
4,244,958 + +0.1
4,244,958 + +2.1
4,244,959 - +0.9
4,244,997 + +1.6
4,244,998 - +1.4
4,245,042 + +0.8
4,245,042 + +1.4
4,245,042 + +1.8
4,245,042 + +0.8
4,245,043 - +1.7
4,245,043 - +1.6
4,245,057 + +1.8
4,245,057 + +0.0
4,245,057 + +0.9
4,245,057 + +1.8
4,245,058 - +2.3
4,245,058 - +1.7
4,245,058 - +1.2
4,245,058 - -2.3
4,245,090 + -0.2
4,245,112 - Psest_4072 0.10 +2.0
4,245,112 - Psest_4072 0.10 +0.9
4,245,288 + Psest_4072 0.17 +1.0
4,245,289 - Psest_4072 0.17 +1.4
4,245,303 + Psest_4072 0.17 +1.5
4,245,303 + Psest_4072 0.17 +2.1
4,245,303 + Psest_4072 0.17 +1.0
4,245,303 + Psest_4072 0.17 -0.0
4,245,303 + Psest_4072 0.17 +1.0
4,245,303 + Psest_4072 0.17 +0.7
4,245,303 + Psest_4072 0.17 +1.6
4,245,303 + Psest_4072 0.17 +1.0
4,245,303 + Psest_4072 0.17 +1.7
4,245,303 + Psest_4072 0.17 +1.8
4,245,304 - Psest_4072 0.17 +1.0
4,245,304 - Psest_4072 0.17 +1.0
4,245,304 - Psest_4072 0.17 +0.9
4,245,308 - Psest_4072 0.17 +1.2
4,245,630 + Psest_4072 0.29 -1.0
4,245,630 + Psest_4072 0.29 +1.2
4,245,630 + Psest_4072 0.29 +0.1
4,245,630 + Psest_4072 0.29 +0.9
4,245,630 + Psest_4072 0.29 +1.5
4,245,630 + Psest_4072 0.29 +2.2
4,245,630 + Psest_4072 0.29 +1.1
4,245,630 + Psest_4072 0.29 +1.4
4,245,630 + Psest_4072 0.29 +1.3
4,245,630 + Psest_4072 0.29 +0.9
4,245,630 + Psest_4072 0.29 +0.8
4,245,630 + Psest_4072 0.29 +0.5
4,245,630 + Psest_4072 0.29 -0.3
4,245,631 - Psest_4072 0.29 +1.3
4,245,631 - Psest_4072 0.29 +1.2
4,245,631 - Psest_4072 0.29 -0.1
4,245,631 - Psest_4072 0.29 +0.8
4,245,631 - Psest_4072 0.29 +0.1
4,245,631 - Psest_4072 0.29 +0.8
4,245,631 - Psest_4072 0.29 +1.4
4,245,631 - Psest_4072 0.29 +2.3
4,245,631 - Psest_4072 0.29 +1.2
4,245,631 - Psest_4072 0.29 -0.1
4,245,631 - Psest_4072 0.29 +1.2
4,245,631 - Psest_4072 0.29 +2.5
4,245,631 - Psest_4072 0.29 +1.0
4,245,631 - Psest_4072 0.29 +2.6
4,245,631 - Psest_4072 0.29 +0.9

Or see this region's nucleotide sequence