Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2816

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2815 and Psest_2816 are separated by 88 nucleotidesPsest_2816 and Psest_2817 are separated by 154 nucleotides Psest_2815: Psest_2815 - S-formylglutathione hydrolase, at 3,003,113 to 3,003,958 _2815 Psest_2816: Psest_2816 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 3,004,047 to 3,005,162 _2816 Psest_2817: Psest_2817 - Transcriptional regulator, at 3,005,317 to 3,006,216 _2817 Position (kb) 3004 3005 3006Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3003.157 kb on + strandat 3003.174 kb on + strandat 3003.174 kb on + strandat 3003.174 kb on + strandat 3003.174 kb on + strandat 3003.174 kb on + strandat 3003.175 kb on - strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.177 kb on + strandat 3003.178 kb on - strandat 3003.178 kb on - strandat 3003.178 kb on - strandat 3003.178 kb on - strandat 3003.178 kb on - strandat 3003.178 kb on - strandat 3003.178 kb on - strandat 3003.178 kb on - strandat 3003.385 kb on - strand, within Psest_2815at 3003.455 kb on + strand, within Psest_2815at 3003.455 kb on + strand, within Psest_2815at 3003.456 kb on - strand, within Psest_2815at 3003.456 kb on - strand, within Psest_2815at 3003.456 kb on - strand, within Psest_2815at 3003.585 kb on + strand, within Psest_2815at 3003.585 kb on + strand, within Psest_2815at 3003.591 kb on + strand, within Psest_2815at 3003.591 kb on + strand, within Psest_2815at 3003.591 kb on + strand, within Psest_2815at 3003.591 kb on + strand, within Psest_2815at 3003.592 kb on - strand, within Psest_2815at 3003.592 kb on - strand, within Psest_2815at 3003.636 kb on + strand, within Psest_2815at 3003.637 kb on - strand, within Psest_2815at 3003.810 kb on + strand, within Psest_2815at 3003.811 kb on - strand, within Psest_2815at 3003.811 kb on - strand, within Psest_2815at 3003.866 kb on + strand, within Psest_2815at 3003.866 kb on + strand, within Psest_2815at 3003.866 kb on + strand, within Psest_2815at 3003.866 kb on + strand, within Psest_2815at 3003.866 kb on + strand, within Psest_2815at 3003.866 kb on + strand, within Psest_2815at 3004.181 kb on - strand, within Psest_2816at 3004.181 kb on - strand, within Psest_2816at 3004.181 kb on - strand, within Psest_2816at 3004.181 kb on - strand, within Psest_2816at 3004.181 kb on - strand, within Psest_2816at 3004.181 kb on - strand, within Psest_2816at 3004.382 kb on - strand, within Psest_2816at 3004.617 kb on - strand, within Psest_2816at 3004.617 kb on - strand, within Psest_2816at 3004.726 kb on + strand, within Psest_2816at 3004.726 kb on + strand, within Psest_2816at 3004.727 kb on - strand, within Psest_2816at 3004.727 kb on - strand, within Psest_2816at 3004.752 kb on - strand, within Psest_2816at 3004.752 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.754 kb on - strand, within Psest_2816at 3004.759 kb on + strand, within Psest_2816at 3004.760 kb on - strand, within Psest_2816at 3004.760 kb on - strand, within Psest_2816at 3004.777 kb on + strand, within Psest_2816at 3004.895 kb on - strand, within Psest_2816at 3005.024 kb on - strand, within Psest_2816at 3005.034 kb on - strand, within Psest_2816at 3005.200 kb on + strandat 3005.200 kb on + strandat 3005.201 kb on - strandat 3005.312 kb on + strandat 3005.534 kb on + strand, within Psest_2817at 3005.535 kb on - strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.806 kb on + strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.807 kb on - strand, within Psest_2817at 3005.827 kb on + strand, within Psest_2817at 3005.827 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.853 kb on + strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3005.854 kb on - strand, within Psest_2817at 3006.029 kb on - strand, within Psest_2817at 3006.029 kb on - strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.031 kb on + strand, within Psest_2817at 3006.032 kb on - strand, within Psest_2817at 3006.032 kb on - strand, within Psest_2817at 3006.032 kb on - strand, within Psest_2817

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,003,157 + +0.5
3,003,174 + +0.1
3,003,174 + +0.1
3,003,174 + +0.6
3,003,174 + -0.2
3,003,174 + +1.3
3,003,175 - +0.4
3,003,177 + +1.6
3,003,177 + -1.8
3,003,177 + +1.4
3,003,177 + -1.0
3,003,177 + -0.6
3,003,177 + -0.8
3,003,177 + +0.2
3,003,177 + -0.5
3,003,177 + +0.3
3,003,177 + +1.1
3,003,177 + -0.3
3,003,178 - -0.8
3,003,178 - -0.6
3,003,178 - -0.2
3,003,178 - +0.4
3,003,178 - -2.3
3,003,178 - +1.6
3,003,178 - -0.3
3,003,178 - +0.5
3,003,385 - Psest_2815 0.32 -1.4
3,003,455 + Psest_2815 0.40 -0.5
3,003,455 + Psest_2815 0.40 -0.5
3,003,456 - Psest_2815 0.41 +0.2
3,003,456 - Psest_2815 0.41 -0.5
3,003,456 - Psest_2815 0.41 +1.0
3,003,585 + Psest_2815 0.56 -0.5
3,003,585 + Psest_2815 0.56 +1.0
3,003,591 + Psest_2815 0.57 +0.3
3,003,591 + Psest_2815 0.57 +0.3
3,003,591 + Psest_2815 0.57 -1.0
3,003,591 + Psest_2815 0.57 +0.3
3,003,592 - Psest_2815 0.57 +0.4
3,003,592 - Psest_2815 0.57 -0.5
3,003,636 + Psest_2815 0.62 +0.4
3,003,637 - Psest_2815 0.62 -0.0
3,003,810 + Psest_2815 0.82 -1.0
3,003,811 - Psest_2815 0.83 -0.2
3,003,811 - Psest_2815 0.83 -1.8
3,003,866 + Psest_2815 0.89 +1.9
3,003,866 + Psest_2815 0.89 -0.7
3,003,866 + Psest_2815 0.89 -1.0
3,003,866 + Psest_2815 0.89 +0.1
3,003,866 + Psest_2815 0.89 -0.3
3,003,866 + Psest_2815 0.89 +1.1
3,004,181 - Psest_2816 0.12 +0.2
3,004,181 - Psest_2816 0.12 +0.7
3,004,181 - Psest_2816 0.12 -0.3
3,004,181 - Psest_2816 0.12 -0.4
3,004,181 - Psest_2816 0.12 -0.8
3,004,181 - Psest_2816 0.12 -1.5
3,004,382 - Psest_2816 0.30 +0.9
3,004,617 - Psest_2816 0.51 -1.2
3,004,617 - Psest_2816 0.51 +0.0
3,004,726 + Psest_2816 0.61 -0.3
3,004,726 + Psest_2816 0.61 -0.0
3,004,727 - Psest_2816 0.61 -2.0
3,004,727 - Psest_2816 0.61 -1.9
3,004,752 - Psest_2816 0.63 +0.5
3,004,752 - Psest_2816 0.63 -1.3
3,004,754 - Psest_2816 0.63 -0.3
3,004,754 - Psest_2816 0.63 +0.5
3,004,754 - Psest_2816 0.63 -1.0
3,004,754 - Psest_2816 0.63 -0.2
3,004,754 - Psest_2816 0.63 +0.6
3,004,754 - Psest_2816 0.63 +0.5
3,004,754 - Psest_2816 0.63 -0.2
3,004,754 - Psest_2816 0.63 -1.2
3,004,759 + Psest_2816 0.64 +1.2
3,004,760 - Psest_2816 0.64 +1.0
3,004,760 - Psest_2816 0.64 -1.3
3,004,777 + Psest_2816 0.65 +0.6
3,004,895 - Psest_2816 0.76 +0.1
3,005,024 - Psest_2816 0.88 -0.1
3,005,034 - Psest_2816 0.88 +1.1
3,005,200 + +2.1
3,005,200 + +0.6
3,005,201 - -0.2
3,005,312 + -1.6
3,005,534 + Psest_2817 0.24 +0.5
3,005,535 - Psest_2817 0.24 -0.8
3,005,806 + Psest_2817 0.54 -0.2
3,005,806 + Psest_2817 0.54 +0.6
3,005,806 + Psest_2817 0.54 +1.3
3,005,806 + Psest_2817 0.54 -0.7
3,005,806 + Psest_2817 0.54 -2.8
3,005,806 + Psest_2817 0.54 -0.5
3,005,807 - Psest_2817 0.54 -1.6
3,005,807 - Psest_2817 0.54 +1.1
3,005,807 - Psest_2817 0.54 +0.1
3,005,807 - Psest_2817 0.54 +0.1
3,005,807 - Psest_2817 0.54 -1.4
3,005,807 - Psest_2817 0.54 +0.1
3,005,807 - Psest_2817 0.54 +0.1
3,005,807 - Psest_2817 0.54 -0.6
3,005,807 - Psest_2817 0.54 -0.2
3,005,827 + Psest_2817 0.57 +0.1
3,005,827 + Psest_2817 0.57 +0.3
3,005,853 + Psest_2817 0.60 +0.7
3,005,853 + Psest_2817 0.60 +1.7
3,005,853 + Psest_2817 0.60 -0.2
3,005,853 + Psest_2817 0.60 -1.2
3,005,853 + Psest_2817 0.60 -0.4
3,005,853 + Psest_2817 0.60 -0.2
3,005,853 + Psest_2817 0.60 +0.1
3,005,853 + Psest_2817 0.60 +0.1
3,005,853 + Psest_2817 0.60 +0.2
3,005,853 + Psest_2817 0.60 +0.5
3,005,853 + Psest_2817 0.60 +0.5
3,005,853 + Psest_2817 0.60 +0.1
3,005,853 + Psest_2817 0.60 +1.2
3,005,853 + Psest_2817 0.60 +1.4
3,005,853 + Psest_2817 0.60 -2.0
3,005,853 + Psest_2817 0.60 -0.8
3,005,853 + Psest_2817 0.60 -0.1
3,005,854 - Psest_2817 0.60 +0.8
3,005,854 - Psest_2817 0.60 +1.4
3,005,854 - Psest_2817 0.60 +0.0
3,005,854 - Psest_2817 0.60 +0.9
3,005,854 - Psest_2817 0.60 +0.2
3,005,854 - Psest_2817 0.60 -0.2
3,005,854 - Psest_2817 0.60 +0.7
3,005,854 - Psest_2817 0.60 +0.8
3,005,854 - Psest_2817 0.60 +1.1
3,005,854 - Psest_2817 0.60 -0.2
3,005,854 - Psest_2817 0.60 +1.1
3,005,854 - Psest_2817 0.60 -1.7
3,005,854 - Psest_2817 0.60 +1.8
3,005,854 - Psest_2817 0.60 +0.6
3,005,854 - Psest_2817 0.60 +0.5
3,005,854 - Psest_2817 0.60 +0.0
3,005,854 - Psest_2817 0.60 +0.1
3,005,854 - Psest_2817 0.60 +0.3
3,005,854 - Psest_2817 0.60 +1.5
3,005,854 - Psest_2817 0.60 -0.1
3,005,854 - Psest_2817 0.60 +0.8
3,005,854 - Psest_2817 0.60 +0.4
3,005,854 - Psest_2817 0.60 +1.6
3,005,854 - Psest_2817 0.60 +0.7
3,005,854 - Psest_2817 0.60 -0.7
3,005,854 - Psest_2817 0.60 +0.3
3,005,854 - Psest_2817 0.60 +0.2
3,005,854 - Psest_2817 0.60 +0.6
3,005,854 - Psest_2817 0.60 -0.0
3,005,854 - Psest_2817 0.60 -0.8
3,005,854 - Psest_2817 0.60 -1.5
3,005,854 - Psest_2817 0.60 -0.2
3,005,854 - Psest_2817 0.60 +0.2
3,005,854 - Psest_2817 0.60 +0.4
3,005,854 - Psest_2817 0.60 +0.5
3,005,854 - Psest_2817 0.60 +0.1
3,006,029 - Psest_2817 0.79 -0.3
3,006,029 - Psest_2817 0.79 -1.3
3,006,031 + Psest_2817 0.79 -0.0
3,006,031 + Psest_2817 0.79 +1.0
3,006,031 + Psest_2817 0.79 -0.1
3,006,031 + Psest_2817 0.79 +0.3
3,006,032 - Psest_2817 0.79 +0.7
3,006,032 - Psest_2817 0.79 -1.5
3,006,032 - Psest_2817 0.79 +0.2

Or see this region's nucleotide sequence