Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2657

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2655 and Psest_2656 are separated by 86 nucleotidesPsest_2656 and Psest_2657 are separated by 183 nucleotides Psest_2655: Psest_2655 - Protease II, at 2,839,237 to 2,841,267 _2655 Psest_2656: Psest_2656 - Protein of unknown function (DUF2892)., at 2,841,354 to 2,841,713 _2656 Psest_2657: Psest_2657 - acetate--CoA ligase, at 2,841,897 to 2,843,852 _2657 Position (kb) 2841 2842 2843 2844Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2840.909 kb on + strand, within Psest_2655at 2840.909 kb on + strand, within Psest_2655at 2840.910 kb on - strand, within Psest_2655at 2840.910 kb on - strand, within Psest_2655at 2840.910 kb on - strand, within Psest_2655at 2840.956 kb on + strand, within Psest_2655at 2841.043 kb on + strand, within Psest_2655at 2841.071 kb on - strandat 2841.328 kb on + strandat 2841.711 kb on + strandat 2841.712 kb on - strandat 2841.799 kb on - strandat 2841.804 kb on + strandat 2841.986 kb on - strandat 2841.986 kb on - strandat 2842.168 kb on + strand, within Psest_2657at 2842.168 kb on + strand, within Psest_2657at 2842.169 kb on - strand, within Psest_2657at 2842.169 kb on - strand, within Psest_2657at 2842.169 kb on - strand, within Psest_2657at 2842.174 kb on + strand, within Psest_2657at 2842.174 kb on + strand, within Psest_2657at 2842.174 kb on + strand, within Psest_2657at 2842.175 kb on - strand, within Psest_2657at 2842.324 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.366 kb on + strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.367 kb on - strand, within Psest_2657at 2842.390 kb on + strand, within Psest_2657at 2842.390 kb on + strand, within Psest_2657at 2842.390 kb on + strand, within Psest_2657at 2842.390 kb on + strand, within Psest_2657at 2842.390 kb on + strand, within Psest_2657at 2842.390 kb on + strand, within Psest_2657at 2842.461 kb on + strand, within Psest_2657at 2842.462 kb on - strand, within Psest_2657at 2842.657 kb on + strand, within Psest_2657at 2842.660 kb on + strand, within Psest_2657at 2842.660 kb on + strand, within Psest_2657at 2842.789 kb on + strand, within Psest_2657at 2842.789 kb on + strand, within Psest_2657at 2842.847 kb on - strand, within Psest_2657at 2842.864 kb on + strand, within Psest_2657at 2842.864 kb on + strand, within Psest_2657at 2842.864 kb on + strand, within Psest_2657at 2842.865 kb on - strand, within Psest_2657at 2842.865 kb on - strand, within Psest_2657at 2842.865 kb on - strand, within Psest_2657at 2842.865 kb on - strand, within Psest_2657at 2842.900 kb on + strand, within Psest_2657at 2842.900 kb on + strand, within Psest_2657at 2842.901 kb on - strand, within Psest_2657at 2842.909 kb on + strand, within Psest_2657at 2842.909 kb on + strand, within Psest_2657at 2842.910 kb on - strand, within Psest_2657at 2842.910 kb on - strand, within Psest_2657at 2842.910 kb on - strand, within Psest_2657at 2842.910 kb on - strand, within Psest_2657at 2842.910 kb on - strand, within Psest_2657at 2842.913 kb on + strand, within Psest_2657at 2842.913 kb on + strand, within Psest_2657at 2842.913 kb on + strand, within Psest_2657at 2842.913 kb on + strand, within Psest_2657at 2842.913 kb on + strand, within Psest_2657at 2842.913 kb on + strand, within Psest_2657at 2842.913 kb on + strand, within Psest_2657at 2842.914 kb on - strand, within Psest_2657at 2842.914 kb on - strand, within Psest_2657at 2842.914 kb on - strand, within Psest_2657at 2842.914 kb on - strand, within Psest_2657at 2842.951 kb on + strand, within Psest_2657at 2843.002 kb on + strand, within Psest_2657at 2843.003 kb on - strand, within Psest_2657at 2843.066 kb on - strand, within Psest_2657at 2843.066 kb on - strand, within Psest_2657at 2843.143 kb on + strand, within Psest_2657at 2843.144 kb on - strand, within Psest_2657at 2843.201 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.440 kb on + strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.441 kb on - strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.466 kb on + strand, within Psest_2657at 2843.467 kb on - strand, within Psest_2657at 2843.524 kb on + strand, within Psest_2657at 2843.525 kb on - strand, within Psest_2657at 2843.525 kb on - strand, within Psest_2657at 2843.525 kb on - strand, within Psest_2657at 2843.525 kb on - strand, within Psest_2657at 2843.770 kb on + strandat 2843.770 kb on + strandat 2843.770 kb on + strandat 2843.771 kb on - strandat 2843.771 kb on - strandat 2843.771 kb on - strandat 2843.771 kb on - strandat 2844.031 kb on + strandat 2844.031 kb on + strandat 2844.031 kb on + strandat 2844.031 kb on + strandat 2844.031 kb on + strandat 2844.032 kb on - strandat 2844.032 kb on - strandat 2844.032 kb on - strandat 2844.032 kb on - strandat 2844.124 kb on + strandat 2844.124 kb on + strandat 2844.163 kb on - strandat 2844.172 kb on + strandat 2844.184 kb on + strandat 2844.184 kb on + strandat 2844.184 kb on + strandat 2844.184 kb on + strandat 2844.184 kb on + strandat 2844.184 kb on + strandat 2844.184 kb on + strandat 2844.185 kb on - strandat 2844.185 kb on - strandat 2844.185 kb on - strandat 2844.320 kb on + strandat 2844.320 kb on + strandat 2844.345 kb on - strandat 2844.345 kb on - strandat 2844.693 kb on + strandat 2844.710 kb on + strandat 2844.710 kb on + strandat 2844.711 kb on - strandat 2844.739 kb on + strandat 2844.739 kb on + strandat 2844.743 kb on + strandat 2844.743 kb on + strandat 2844.743 kb on + strandat 2844.743 kb on + strandat 2844.743 kb on + strandat 2844.743 kb on + strandat 2844.743 kb on + strandat 2844.744 kb on - strandat 2844.744 kb on - strandat 2844.744 kb on - strandat 2844.744 kb on - strandat 2844.744 kb on - strandat 2844.744 kb on - strandat 2844.744 kb on - strandat 2844.761 kb on + strandat 2844.762 kb on - strandat 2844.773 kb on + strandat 2844.773 kb on + strandat 2844.773 kb on + strandat 2844.773 kb on + strandat 2844.773 kb on + strandat 2844.773 kb on + strandat 2844.773 kb on + strandat 2844.773 kb on + strandat 2844.774 kb on - strandat 2844.774 kb on - strandat 2844.774 kb on - strandat 2844.774 kb on - strandat 2844.774 kb on - strandat 2844.830 kb on + strandat 2844.830 kb on + strandat 2844.830 kb on + strandat 2844.830 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
2,840,909 + Psest_2655 0.82 +0.3
2,840,909 + Psest_2655 0.82 +0.0
2,840,910 - Psest_2655 0.82 +0.9
2,840,910 - Psest_2655 0.82 +0.8
2,840,910 - Psest_2655 0.82 -0.7
2,840,956 + Psest_2655 0.85 -1.6
2,841,043 + Psest_2655 0.89 +0.4
2,841,071 - -0.2
2,841,328 + -1.3
2,841,711 + -3.3
2,841,712 - +0.3
2,841,799 - +1.0
2,841,804 + +0.8
2,841,986 - +1.3
2,841,986 - -0.5
2,842,168 + Psest_2657 0.14 +0.8
2,842,168 + Psest_2657 0.14 -0.7
2,842,169 - Psest_2657 0.14 +0.4
2,842,169 - Psest_2657 0.14 -0.8
2,842,169 - Psest_2657 0.14 +0.1
2,842,174 + Psest_2657 0.14 -1.4
2,842,174 + Psest_2657 0.14 -0.5
2,842,174 + Psest_2657 0.14 +1.5
2,842,175 - Psest_2657 0.14 +0.1
2,842,324 + Psest_2657 0.22 -2.0
2,842,366 + Psest_2657 0.24 +0.8
2,842,366 + Psest_2657 0.24 -0.3
2,842,366 + Psest_2657 0.24 +0.2
2,842,366 + Psest_2657 0.24 -0.6
2,842,366 + Psest_2657 0.24 -2.2
2,842,366 + Psest_2657 0.24 -0.2
2,842,366 + Psest_2657 0.24 +0.3
2,842,366 + Psest_2657 0.24 +1.8
2,842,366 + Psest_2657 0.24 +0.2
2,842,366 + Psest_2657 0.24 -1.1
2,842,367 - Psest_2657 0.24 +0.5
2,842,367 - Psest_2657 0.24 -1.0
2,842,367 - Psest_2657 0.24 +0.2
2,842,367 - Psest_2657 0.24 +0.2
2,842,367 - Psest_2657 0.24 -0.8
2,842,367 - Psest_2657 0.24 -0.1
2,842,367 - Psest_2657 0.24 +0.8
2,842,367 - Psest_2657 0.24 +0.2
2,842,367 - Psest_2657 0.24 -0.4
2,842,390 + Psest_2657 0.25 +0.5
2,842,390 + Psest_2657 0.25 +0.6
2,842,390 + Psest_2657 0.25 +0.3
2,842,390 + Psest_2657 0.25 -0.3
2,842,390 + Psest_2657 0.25 +0.2
2,842,390 + Psest_2657 0.25 +0.6
2,842,461 + Psest_2657 0.29 +0.8
2,842,462 - Psest_2657 0.29 +0.5
2,842,657 + Psest_2657 0.39 +0.3
2,842,660 + Psest_2657 0.39 -0.5
2,842,660 + Psest_2657 0.39 -1.6
2,842,789 + Psest_2657 0.46 +0.9
2,842,789 + Psest_2657 0.46 -0.2
2,842,847 - Psest_2657 0.49 -1.6
2,842,864 + Psest_2657 0.49 +1.3
2,842,864 + Psest_2657 0.49 -0.2
2,842,864 + Psest_2657 0.49 -0.6
2,842,865 - Psest_2657 0.49 +0.4
2,842,865 - Psest_2657 0.49 +1.7
2,842,865 - Psest_2657 0.49 +1.8
2,842,865 - Psest_2657 0.49 +2.3
2,842,900 + Psest_2657 0.51 -0.9
2,842,900 + Psest_2657 0.51 +0.7
2,842,901 - Psest_2657 0.51 +0.0
2,842,909 + Psest_2657 0.52 -1.4
2,842,909 + Psest_2657 0.52 +0.1
2,842,910 - Psest_2657 0.52 +1.2
2,842,910 - Psest_2657 0.52 +0.0
2,842,910 - Psest_2657 0.52 -0.7
2,842,910 - Psest_2657 0.52 -0.3
2,842,910 - Psest_2657 0.52 -0.2
2,842,913 + Psest_2657 0.52 -0.1
2,842,913 + Psest_2657 0.52 +0.6
2,842,913 + Psest_2657 0.52 -0.5
2,842,913 + Psest_2657 0.52 +1.3
2,842,913 + Psest_2657 0.52 -0.3
2,842,913 + Psest_2657 0.52 -1.1
2,842,913 + Psest_2657 0.52 +0.2
2,842,914 - Psest_2657 0.52 -2.1
2,842,914 - Psest_2657 0.52 +0.0
2,842,914 - Psest_2657 0.52 +0.0
2,842,914 - Psest_2657 0.52 +0.5
2,842,951 + Psest_2657 0.54 -1.2
2,843,002 + Psest_2657 0.56 +0.2
2,843,003 - Psest_2657 0.57 +0.5
2,843,066 - Psest_2657 0.60 +1.1
2,843,066 - Psest_2657 0.60 +0.8
2,843,143 + Psest_2657 0.64 +0.5
2,843,144 - Psest_2657 0.64 -0.5
2,843,201 + Psest_2657 0.67 -0.3
2,843,440 + Psest_2657 0.79 +0.9
2,843,440 + Psest_2657 0.79 -0.3
2,843,440 + Psest_2657 0.79 +0.2
2,843,440 + Psest_2657 0.79 +0.3
2,843,440 + Psest_2657 0.79 +0.2
2,843,440 + Psest_2657 0.79 +2.0
2,843,440 + Psest_2657 0.79 +0.4
2,843,440 + Psest_2657 0.79 -0.3
2,843,440 + Psest_2657 0.79 -0.5
2,843,440 + Psest_2657 0.79 -0.5
2,843,441 - Psest_2657 0.79 +0.7
2,843,441 - Psest_2657 0.79 +0.9
2,843,441 - Psest_2657 0.79 -2.8
2,843,441 - Psest_2657 0.79 +0.1
2,843,441 - Psest_2657 0.79 +0.8
2,843,441 - Psest_2657 0.79 +0.8
2,843,441 - Psest_2657 0.79 -1.0
2,843,441 - Psest_2657 0.79 -1.1
2,843,466 + Psest_2657 0.80 +0.6
2,843,466 + Psest_2657 0.80 -0.4
2,843,466 + Psest_2657 0.80 -0.7
2,843,466 + Psest_2657 0.80 -0.3
2,843,466 + Psest_2657 0.80 +0.4
2,843,466 + Psest_2657 0.80 +0.1
2,843,466 + Psest_2657 0.80 +1.5
2,843,466 + Psest_2657 0.80 -0.7
2,843,466 + Psest_2657 0.80 +0.6
2,843,466 + Psest_2657 0.80 +0.3
2,843,467 - Psest_2657 0.80 -0.5
2,843,524 + Psest_2657 0.83 +0.4
2,843,525 - Psest_2657 0.83 -0.7
2,843,525 - Psest_2657 0.83 -0.2
2,843,525 - Psest_2657 0.83 -0.9
2,843,525 - Psest_2657 0.83 -0.1
2,843,770 + +1.1
2,843,770 + +0.2
2,843,770 + -0.0
2,843,771 - -0.8
2,843,771 - -1.1
2,843,771 - +0.6
2,843,771 - +1.6
2,844,031 + -0.3
2,844,031 + -0.2
2,844,031 + +0.0
2,844,031 + +0.2
2,844,031 + -0.2
2,844,032 - -0.1
2,844,032 - +0.0
2,844,032 - +0.9
2,844,032 - +0.1
2,844,124 + +0.7
2,844,124 + +0.2
2,844,163 - +1.6
2,844,172 + +1.0
2,844,184 + +0.9
2,844,184 + +0.2
2,844,184 + -0.6
2,844,184 + -1.6
2,844,184 + -0.1
2,844,184 + +1.5
2,844,184 + +1.0
2,844,185 - +0.3
2,844,185 - +0.1
2,844,185 - +1.4
2,844,320 + +1.1
2,844,320 + -1.9
2,844,345 - -0.9
2,844,345 - -0.3
2,844,693 + -0.0
2,844,710 + -0.4
2,844,710 + +0.5
2,844,711 - -1.1
2,844,739 + +0.3
2,844,739 + +0.4
2,844,743 + +1.0
2,844,743 + +0.0
2,844,743 + +0.2
2,844,743 + -0.1
2,844,743 + -1.3
2,844,743 + +1.3
2,844,743 + +0.0
2,844,744 - +0.2
2,844,744 - +0.2
2,844,744 - +1.7
2,844,744 - +0.8
2,844,744 - -0.5
2,844,744 - +1.4
2,844,744 - -0.7
2,844,761 + -1.3
2,844,762 - +0.4
2,844,773 + -2.8
2,844,773 + -0.1
2,844,773 + +0.5
2,844,773 + -0.6
2,844,773 + +1.0
2,844,773 + -0.3
2,844,773 + -0.9
2,844,773 + -0.1
2,844,774 - +0.0
2,844,774 - -0.7
2,844,774 - -0.1
2,844,774 - -1.4
2,844,774 - -0.4
2,844,830 + +1.0
2,844,830 + +0.4
2,844,830 + +2.2
2,844,830 + -1.0

Or see this region's nucleotide sequence