Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2220

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2218 and Psest_2219 overlap by 4 nucleotidesPsest_2219 and Psest_2220 overlap by 1 nucleotides Psest_2218: Psest_2218 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 2,367,168 to 2,368,142 _2218 Psest_2219: Psest_2219 - pyruvate dehydrogenase E1 component, alpha subunit, at 2,368,139 to 2,369,131 _2219 Psest_2220: Psest_2220 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 2,369,131 to 2,370,888 _2220 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -2 -1 0 1 2at 2368.161 kb on + strandat 2368.161 kb on + strandat 2368.161 kb on + strandat 2368.162 kb on - strandat 2368.162 kb on - strandat 2368.308 kb on + strand, within Psest_2219at 2368.308 kb on + strand, within Psest_2219at 2368.308 kb on + strand, within Psest_2219at 2368.309 kb on - strand, within Psest_2219at 2368.362 kb on + strand, within Psest_2219at 2368.402 kb on - strand, within Psest_2219at 2368.402 kb on - strand, within Psest_2219at 2368.422 kb on + strand, within Psest_2219at 2368.857 kb on + strand, within Psest_2219at 2368.858 kb on - strand, within Psest_2219at 2368.858 kb on - strand, within Psest_2219at 2368.920 kb on + strand, within Psest_2219at 2368.968 kb on - strand, within Psest_2219at 2368.992 kb on + strand, within Psest_2219at 2368.992 kb on + strand, within Psest_2219at 2368.992 kb on + strand, within Psest_2219at 2368.992 kb on + strand, within Psest_2219at 2368.992 kb on + strand, within Psest_2219at 2368.992 kb on + strand, within Psest_2219at 2368.992 kb on + strand, within Psest_2219at 2368.993 kb on - strand, within Psest_2219at 2368.993 kb on - strand, within Psest_2219at 2368.993 kb on - strand, within Psest_2219at 2368.993 kb on - strand, within Psest_2219at 2368.993 kb on - strand, within Psest_2219at 2368.993 kb on - strand, within Psest_2219at 2368.993 kb on - strand, within Psest_2219at 2369.505 kb on - strand, within Psest_2220at 2369.547 kb on - strand, within Psest_2220at 2369.547 kb on - strand, within Psest_2220at 2369.594 kb on + strand, within Psest_2220at 2369.595 kb on - strand, within Psest_2220at 2369.656 kb on + strand, within Psest_2220at 2369.961 kb on - strand, within Psest_2220at 2370.071 kb on + strand, within Psest_2220at 2370.071 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.113 kb on + strand, within Psest_2220at 2370.114 kb on - strand, within Psest_2220at 2370.114 kb on - strand, within Psest_2220at 2370.114 kb on - strand, within Psest_2220at 2370.114 kb on - strand, within Psest_2220at 2370.114 kb on - strand, within Psest_2220at 2370.114 kb on - strand, within Psest_2220at 2370.114 kb on - strand, within Psest_2220at 2370.158 kb on + strand, within Psest_2220at 2370.158 kb on + strand, within Psest_2220at 2370.158 kb on + strand, within Psest_2220at 2370.159 kb on - strand, within Psest_2220at 2370.159 kb on - strand, within Psest_2220at 2370.159 kb on - strand, within Psest_2220at 2370.159 kb on - strand, within Psest_2220at 2370.347 kb on + strand, within Psest_2220at 2370.502 kb on + strand, within Psest_2220at 2370.539 kb on + strand, within Psest_2220at 2370.540 kb on - strand, within Psest_2220at 2370.540 kb on - strand, within Psest_2220at 2370.643 kb on + strand, within Psest_2220at 2370.643 kb on + strand, within Psest_2220at 2370.643 kb on + strand, within Psest_2220at 2370.643 kb on + strand, within Psest_2220at 2370.643 kb on + strand, within Psest_2220at 2370.644 kb on - strand, within Psest_2220at 2370.644 kb on - strand, within Psest_2220at 2370.647 kb on + strand, within Psest_2220at 2370.648 kb on - strand, within Psest_2220at 2370.882 kb on + strandat 2370.888 kb on + strandat 2371.054 kb on + strandat 2371.055 kb on - strandat 2371.183 kb on - strandat 2371.257 kb on + strandat 2371.257 kb on + strandat 2371.258 kb on - strandat 2371.281 kb on + strandat 2371.291 kb on + strandat 2371.291 kb on + strandat 2371.292 kb on - strandat 2371.790 kb on + strandat 2371.790 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,368,161 + -0.2
2,368,161 + +0.3
2,368,161 + -2.2
2,368,162 - +0.5
2,368,162 - -0.0
2,368,308 + Psest_2219 0.17 -0.2
2,368,308 + Psest_2219 0.17 +0.9
2,368,308 + Psest_2219 0.17 +0.6
2,368,309 - Psest_2219 0.17 -0.1
2,368,362 + Psest_2219 0.22 +0.3
2,368,402 - Psest_2219 0.26 +0.7
2,368,402 - Psest_2219 0.26 -0.3
2,368,422 + Psest_2219 0.28 +2.1
2,368,857 + Psest_2219 0.72 -0.3
2,368,858 - Psest_2219 0.72 +0.6
2,368,858 - Psest_2219 0.72 -1.8
2,368,920 + Psest_2219 0.79 +0.2
2,368,968 - Psest_2219 0.83 +0.5
2,368,992 + Psest_2219 0.86 +0.1
2,368,992 + Psest_2219 0.86 +1.1
2,368,992 + Psest_2219 0.86 +0.6
2,368,992 + Psest_2219 0.86 +0.3
2,368,992 + Psest_2219 0.86 +0.1
2,368,992 + Psest_2219 0.86 +0.6
2,368,992 + Psest_2219 0.86 -0.6
2,368,993 - Psest_2219 0.86 +0.4
2,368,993 - Psest_2219 0.86 +0.8
2,368,993 - Psest_2219 0.86 -0.3
2,368,993 - Psest_2219 0.86 +0.9
2,368,993 - Psest_2219 0.86 +0.0
2,368,993 - Psest_2219 0.86 -1.4
2,368,993 - Psest_2219 0.86 -0.4
2,369,505 - Psest_2220 0.21 -0.7
2,369,547 - Psest_2220 0.24 -0.2
2,369,547 - Psest_2220 0.24 -1.6
2,369,594 + Psest_2220 0.26 -0.3
2,369,595 - Psest_2220 0.26 +0.9
2,369,656 + Psest_2220 0.30 -0.5
2,369,961 - Psest_2220 0.47 +0.5
2,370,071 + Psest_2220 0.53 +0.3
2,370,071 + Psest_2220 0.53 -0.6
2,370,113 + Psest_2220 0.56 -0.6
2,370,113 + Psest_2220 0.56 -0.9
2,370,113 + Psest_2220 0.56 +0.2
2,370,113 + Psest_2220 0.56 -0.4
2,370,113 + Psest_2220 0.56 +0.5
2,370,113 + Psest_2220 0.56 +1.2
2,370,113 + Psest_2220 0.56 -1.3
2,370,113 + Psest_2220 0.56 +0.2
2,370,113 + Psest_2220 0.56 -0.7
2,370,113 + Psest_2220 0.56 -0.9
2,370,114 - Psest_2220 0.56 -1.2
2,370,114 - Psest_2220 0.56 -0.1
2,370,114 - Psest_2220 0.56 -0.4
2,370,114 - Psest_2220 0.56 -0.8
2,370,114 - Psest_2220 0.56 +0.3
2,370,114 - Psest_2220 0.56 +0.9
2,370,114 - Psest_2220 0.56 +0.2
2,370,158 + Psest_2220 0.58 +0.2
2,370,158 + Psest_2220 0.58 -1.4
2,370,158 + Psest_2220 0.58 +1.8
2,370,159 - Psest_2220 0.58 +0.7
2,370,159 - Psest_2220 0.58 +0.3
2,370,159 - Psest_2220 0.58 -0.5
2,370,159 - Psest_2220 0.58 +1.3
2,370,347 + Psest_2220 0.69 -1.6
2,370,502 + Psest_2220 0.78 +0.4
2,370,539 + Psest_2220 0.80 +0.7
2,370,540 - Psest_2220 0.80 +0.7
2,370,540 - Psest_2220 0.80 -1.0
2,370,643 + Psest_2220 0.86 +1.4
2,370,643 + Psest_2220 0.86 -0.1
2,370,643 + Psest_2220 0.86 +0.2
2,370,643 + Psest_2220 0.86 +0.5
2,370,643 + Psest_2220 0.86 -0.6
2,370,644 - Psest_2220 0.86 -0.1
2,370,644 - Psest_2220 0.86 -0.4
2,370,647 + Psest_2220 0.86 -0.2
2,370,648 - Psest_2220 0.86 -0.3
2,370,882 + -0.0
2,370,888 + -0.5
2,371,054 + +0.0
2,371,055 - -0.0
2,371,183 - -1.6
2,371,257 + +0.5
2,371,257 + -0.6
2,371,258 - +0.3
2,371,281 + -1.4
2,371,291 + +0.4
2,371,291 + -2.1
2,371,292 - -0.2
2,371,790 + -0.0
2,371,790 + -0.2

Or see this region's nucleotide sequence