Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2086

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2085 and Psest_2086 are separated by 13 nucleotidesPsest_2086 and Psest_2087 are separated by 109 nucleotidesPsest_2087 and Psest_2088 are separated by 59 nucleotidesPsest_2088 and Psest_2089 overlap by 17 nucleotides Psest_2085: Psest_2085 - Periplasmic serine proteases (ClpP class), at 2,214,098 to 2,215,120 _2085 Psest_2086: Psest_2086 - putative quinone oxidoreductase, YhdH/YhfP family, at 2,215,134 to 2,216,126 _2086 Psest_2087: Psest_2087 - hypothetical protein, at 2,216,236 to 2,216,337 _2087 Psest_2088: Psest_2088 - Uncharacterized protein conserved in bacteria, at 2,216,397 to 2,216,897 _2088 Psest_2089: Psest_2089 - Sulfite reductase, beta subunit (hemoprotein), at 2,216,881 to 2,218,539 _2089 Position (kb) 2215 2216 2217Strain fitness (log2 ratio) -2 -1 0 1 2at 2214.251 kb on + strand, within Psest_2085at 2214.516 kb on - strand, within Psest_2085at 2214.605 kb on + strand, within Psest_2085at 2214.749 kb on + strand, within Psest_2085at 2214.824 kb on - strand, within Psest_2085at 2214.962 kb on + strand, within Psest_2085at 2215.007 kb on + strand, within Psest_2085at 2215.007 kb on + strand, within Psest_2085at 2215.007 kb on + strand, within Psest_2085at 2215.007 kb on + strand, within Psest_2085at 2215.007 kb on + strand, within Psest_2085at 2215.007 kb on + strand, within Psest_2085at 2215.007 kb on + strand, within Psest_2085at 2215.008 kb on - strand, within Psest_2085at 2215.008 kb on - strand, within Psest_2085at 2215.008 kb on - strand, within Psest_2085at 2215.008 kb on - strand, within Psest_2085at 2215.008 kb on - strand, within Psest_2085at 2215.008 kb on - strand, within Psest_2085at 2215.011 kb on + strand, within Psest_2085at 2215.011 kb on + strand, within Psest_2085at 2215.012 kb on - strand, within Psest_2085at 2215.012 kb on - strand, within Psest_2085at 2215.012 kb on - strand, within Psest_2085at 2215.012 kb on - strand, within Psest_2085at 2215.060 kb on + strandat 2215.153 kb on + strandat 2215.251 kb on + strand, within Psest_2086at 2215.280 kb on - strand, within Psest_2086at 2215.314 kb on + strand, within Psest_2086at 2215.446 kb on + strand, within Psest_2086at 2215.516 kb on + strand, within Psest_2086at 2215.517 kb on - strand, within Psest_2086at 2215.628 kb on + strand, within Psest_2086at 2215.659 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.661 kb on + strand, within Psest_2086at 2215.662 kb on - strand, within Psest_2086at 2215.662 kb on - strand, within Psest_2086at 2215.662 kb on - strand, within Psest_2086at 2215.675 kb on + strand, within Psest_2086at 2215.916 kb on + strand, within Psest_2086at 2215.916 kb on + strand, within Psest_2086at 2216.113 kb on + strandat 2216.113 kb on + strandat 2216.114 kb on - strandat 2216.138 kb on + strandat 2216.139 kb on - strandat 2216.139 kb on - strandat 2216.317 kb on - strand, within Psest_2087at 2216.330 kb on - strandat 2216.330 kb on - strandat 2216.449 kb on + strand, within Psest_2088at 2216.449 kb on + strand, within Psest_2088at 2216.449 kb on + strand, within Psest_2088

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,214,251 + Psest_2085 0.15 -1.0
2,214,516 - Psest_2085 0.41 +0.4
2,214,605 + Psest_2085 0.50 -2.7
2,214,749 + Psest_2085 0.64 -0.3
2,214,824 - Psest_2085 0.71 +0.4
2,214,962 + Psest_2085 0.84 +0.1
2,215,007 + Psest_2085 0.89 -1.2
2,215,007 + Psest_2085 0.89 -1.5
2,215,007 + Psest_2085 0.89 +2.1
2,215,007 + Psest_2085 0.89 -1.9
2,215,007 + Psest_2085 0.89 +1.7
2,215,007 + Psest_2085 0.89 -0.9
2,215,007 + Psest_2085 0.89 -1.9
2,215,008 - Psest_2085 0.89 -1.1
2,215,008 - Psest_2085 0.89 +0.6
2,215,008 - Psest_2085 0.89 -0.0
2,215,008 - Psest_2085 0.89 +0.4
2,215,008 - Psest_2085 0.89 -2.0
2,215,008 - Psest_2085 0.89 -1.3
2,215,011 + Psest_2085 0.89 -0.7
2,215,011 + Psest_2085 0.89 -0.3
2,215,012 - Psest_2085 0.89 +0.1
2,215,012 - Psest_2085 0.89 -0.8
2,215,012 - Psest_2085 0.89 +0.2
2,215,012 - Psest_2085 0.89 -0.5
2,215,060 + -0.4
2,215,153 + -0.2
2,215,251 + Psest_2086 0.12 -0.3
2,215,280 - Psest_2086 0.15 -0.2
2,215,314 + Psest_2086 0.18 -0.2
2,215,446 + Psest_2086 0.31 -0.1
2,215,516 + Psest_2086 0.38 -0.2
2,215,517 - Psest_2086 0.39 +0.3
2,215,628 + Psest_2086 0.50 -0.4
2,215,659 + Psest_2086 0.53 +0.7
2,215,661 + Psest_2086 0.53 -0.0
2,215,661 + Psest_2086 0.53 +1.6
2,215,661 + Psest_2086 0.53 -1.7
2,215,661 + Psest_2086 0.53 +0.5
2,215,661 + Psest_2086 0.53 -0.9
2,215,661 + Psest_2086 0.53 +0.9
2,215,662 - Psest_2086 0.53 -0.5
2,215,662 - Psest_2086 0.53 -0.5
2,215,662 - Psest_2086 0.53 +0.2
2,215,675 + Psest_2086 0.54 -2.0
2,215,916 + Psest_2086 0.79 -1.2
2,215,916 + Psest_2086 0.79 +0.4
2,216,113 + +0.7
2,216,113 + +1.7
2,216,114 - -1.9
2,216,138 + +0.3
2,216,139 - -0.5
2,216,139 - +1.0
2,216,317 - Psest_2087 0.79 -0.7
2,216,330 - -0.7
2,216,330 - -0.4
2,216,449 + Psest_2088 0.10 -1.4
2,216,449 + Psest_2088 0.10 -0.6
2,216,449 + Psest_2088 0.10 -1.0

Or see this region's nucleotide sequence