Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1690

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1688 and Psest_1689 are separated by 192 nucleotidesPsest_1689 and Psest_1690 are separated by 172 nucleotidesPsest_1690 and Psest_1691 overlap by 4 nucleotidesPsest_1691 and Psest_1692 overlap by 4 nucleotides Psest_1688: Psest_1688 - 3-oxoacyl-(acyl-carrier-protein) reductase, at 1,796,337 to 1,797,080 _1688 Psest_1689: Psest_1689 - acyl carrier protein, at 1,797,273 to 1,797,509 _1689 Psest_1690: Psest_1690 - beta-ketoacyl-acyl-carrier-protein synthase II, at 1,797,682 to 1,798,926 _1690 Psest_1691: Psest_1691 - aminodeoxychorismate lyase, at 1,798,923 to 1,799,744 _1691 Psest_1692: Psest_1692 - conserved hypothetical protein, YceG family, at 1,799,741 to 1,800,811 _1692 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.069 kb on + strandat 1797.126 kb on + strandat 1797.126 kb on + strandat 1797.130 kb on + strandat 1797.130 kb on + strandat 1797.130 kb on + strandat 1797.130 kb on + strandat 1797.132 kb on + strandat 1797.132 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.217 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.219 kb on + strandat 1797.507 kb on + strandat 1797.514 kb on + strandat 1797.662 kb on + strandat 1797.666 kb on + strandat 1797.666 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strandat 1797.668 kb on + strandat 1798.955 kb on + strandat 1798.957 kb on + strandat 1799.027 kb on + strand, within Psest_1691at 1799.028 kb on - strand, within Psest_1691at 1799.423 kb on + strand, within Psest_1691at 1799.423 kb on + strand, within Psest_1691at 1799.640 kb on + strand, within Psest_1691at 1799.640 kb on + strand, within Psest_1691

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,797,069 + -3.1
1,797,069 + -0.2
1,797,069 + -0.9
1,797,069 + -2.4
1,797,069 + -2.4
1,797,069 + -3.0
1,797,069 + -0.5
1,797,069 + -1.6
1,797,069 + -0.3
1,797,069 + -1.2
1,797,069 + +1.2
1,797,069 + +0.8
1,797,069 + -1.8
1,797,126 + -0.1
1,797,126 + +1.3
1,797,130 + -1.7
1,797,130 + +0.8
1,797,130 + -2.9
1,797,130 + +1.0
1,797,132 + -1.0
1,797,132 + -0.1
1,797,217 + -1.5
1,797,217 + +0.2
1,797,217 + -0.7
1,797,217 + +1.6
1,797,217 + -2.0
1,797,219 + -0.9
1,797,219 + -1.8
1,797,219 + -1.5
1,797,219 + +1.1
1,797,219 + +0.8
1,797,507 + +2.5
1,797,514 + +0.1
1,797,662 + -1.3
1,797,666 + -1.2
1,797,666 + +0.7
1,797,668 + +0.8
1,797,668 + +1.0
1,797,668 + +3.1
1,797,668 + -1.4
1,797,668 + -0.6
1,798,955 + +1.1
1,798,957 + +0.2
1,799,027 + Psest_1691 0.13 -0.4
1,799,028 - Psest_1691 0.13 -1.1
1,799,423 + Psest_1691 0.61 -1.2
1,799,423 + Psest_1691 0.61 +0.5
1,799,640 + Psest_1691 0.87 -0.3
1,799,640 + Psest_1691 0.87 -0.1

Or see this region's nucleotide sequence