Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1838

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1837 and Psest_1838 are separated by 131 nucleotidesPsest_1838 and Psest_1839 are separated by 13 nucleotidesPsest_1839 and Psest_1840 are separated by 157 nucleotides Psest_1837: Psest_1837 - Endoglucanase, at 1,939,319 to 1,940,398 _1837 Psest_1838: Psest_1838 - capsular exopolysaccharide family, at 1,940,530 to 1,942,746 _1838 Psest_1839: Psest_1839 - Protein-tyrosine-phosphatase, at 1,942,760 to 1,943,197 _1839 Psest_1840: Psest_1840 - Undecaprenyl-phosphate glucose phosphotransferase, at 1,943,355 to 1,944,782 _1840 Position (kb) 1940 1941 1942 1943Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1939.620 kb on - strand, within Psest_1837at 1939.663 kb on - strand, within Psest_1837at 1939.663 kb on - strand, within Psest_1837at 1939.663 kb on - strand, within Psest_1837at 1939.663 kb on - strand, within Psest_1837at 1939.663 kb on - strand, within Psest_1837at 1939.663 kb on - strand, within Psest_1837at 1939.663 kb on - strand, within Psest_1837at 1939.705 kb on - strand, within Psest_1837at 1939.957 kb on - strand, within Psest_1837at 1939.957 kb on - strand, within Psest_1837at 1939.957 kb on - strand, within Psest_1837at 1939.957 kb on - strand, within Psest_1837at 1939.966 kb on - strand, within Psest_1837at 1940.011 kb on - strand, within Psest_1837at 1940.011 kb on - strand, within Psest_1837at 1940.011 kb on - strand, within Psest_1837at 1940.011 kb on - strand, within Psest_1837at 1940.011 kb on - strand, within Psest_1837at 1940.011 kb on - strand, within Psest_1837at 1940.011 kb on - strand, within Psest_1837at 1940.175 kb on + strand, within Psest_1837at 1940.176 kb on - strand, within Psest_1837at 1940.176 kb on - strand, within Psest_1837at 1940.206 kb on - strand, within Psest_1837at 1940.206 kb on - strand, within Psest_1837at 1940.206 kb on - strand, within Psest_1837at 1940.410 kb on - strandat 1940.410 kb on - strandat 1940.453 kb on + strandat 1940.454 kb on - strandat 1940.454 kb on - strandat 1940.456 kb on + strandat 1940.457 kb on - strandat 1940.562 kb on - strandat 1940.562 kb on - strandat 1940.562 kb on - strandat 1943.281 kb on - strandat 1943.359 kb on + strandat 1943.359 kb on + strandat 1943.359 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.407 kb on + strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.408 kb on - strandat 1943.440 kb on + strandat 1943.440 kb on + strandat 1943.440 kb on + strandat 1943.440 kb on + strandat 1943.440 kb on + strandat 1943.440 kb on + strandat 1943.441 kb on - strandat 1943.441 kb on - strandat 1943.557 kb on + strand, within Psest_1840at 1943.557 kb on + strand, within Psest_1840at 1943.558 kb on - strand, within Psest_1840at 1943.558 kb on - strand, within Psest_1840

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,939,620 - Psest_1837 0.28 -0.7
1,939,663 - Psest_1837 0.32 +2.1
1,939,663 - Psest_1837 0.32 +0.8
1,939,663 - Psest_1837 0.32 +0.8
1,939,663 - Psest_1837 0.32 -1.1
1,939,663 - Psest_1837 0.32 +2.1
1,939,663 - Psest_1837 0.32 +0.4
1,939,663 - Psest_1837 0.32 -1.6
1,939,705 - Psest_1837 0.36 +0.5
1,939,957 - Psest_1837 0.59 -0.3
1,939,957 - Psest_1837 0.59 +0.4
1,939,957 - Psest_1837 0.59 -0.3
1,939,957 - Psest_1837 0.59 +0.4
1,939,966 - Psest_1837 0.60 -0.3
1,940,011 - Psest_1837 0.64 -0.2
1,940,011 - Psest_1837 0.64 +0.2
1,940,011 - Psest_1837 0.64 +0.2
1,940,011 - Psest_1837 0.64 -0.3
1,940,011 - Psest_1837 0.64 +0.3
1,940,011 - Psest_1837 0.64 +1.1
1,940,011 - Psest_1837 0.64 +3.0
1,940,175 + Psest_1837 0.79 +1.2
1,940,176 - Psest_1837 0.79 -0.9
1,940,176 - Psest_1837 0.79 -0.3
1,940,206 - Psest_1837 0.82 -0.7
1,940,206 - Psest_1837 0.82 -0.5
1,940,206 - Psest_1837 0.82 -0.2
1,940,410 - +0.4
1,940,410 - +0.3
1,940,453 + +0.8
1,940,454 - -2.2
1,940,454 - -1.9
1,940,456 + -0.6
1,940,457 - +0.5
1,940,562 - +1.3
1,940,562 - +1.3
1,940,562 - +0.6
1,943,281 - -2.3
1,943,359 + +3.0
1,943,359 + +3.2
1,943,359 + +3.0
1,943,407 + +2.5
1,943,407 + +3.1
1,943,407 + +3.4
1,943,407 + +3.4
1,943,407 + +3.0
1,943,407 + +3.0
1,943,407 + +3.3
1,943,407 + +3.1
1,943,407 + +3.5
1,943,407 + +3.2
1,943,408 - +3.1
1,943,408 - +3.3
1,943,408 - +3.3
1,943,408 - +3.0
1,943,408 - +2.7
1,943,408 - +3.1
1,943,408 - +3.3
1,943,440 + +3.2
1,943,440 + +3.3
1,943,440 + +3.0
1,943,440 + +3.3
1,943,440 + +3.2
1,943,440 + +2.9
1,943,441 - +2.8
1,943,441 - +3.3
1,943,557 + Psest_1840 0.14 +3.2
1,943,557 + Psest_1840 0.14 +3.2
1,943,558 - Psest_1840 0.14 +3.1
1,943,558 - Psest_1840 0.14 +3.1

Or see this region's nucleotide sequence