Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1000

Experiment: L-Valine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (N)
1,083,114	-		Psest_0999	0.36	-2.4
1,083,734	+		Psest_0999	0.80	-0.9
1,083,734	+		Psest_0999	0.80	+0.4
1,083,734	+		Psest_0999	0.80	-1.9
1,083,734	+		Psest_0999	0.80	-1.6
1,083,734	+		Psest_0999	0.80	+0.1
1,083,734	+		Psest_0999	0.80	+1.4
1,083,735	-		Psest_0999	0.80	-2.3
1,083,735	-		Psest_0999	0.80	-1.7
1,083,785	+		Psest_0999	0.84	-1.1
1,084,022	-				-0.6
1,084,022	-				-1.0
1,084,085	+				+1.0
1,084,086	-				+1.2
1,084,086	-				+1.8
1,084,326	+				+0.4
1,084,327	-				+0.4
1,085,232	+		Psest_1000	0.39	-1.4
1,085,233	-		Psest_1000	0.39	-2.0
1,085,254	-		Psest_1000	0.40	-3.2
1,085,583	-		Psest_1000	0.51	-1.4
1,085,583	-		Psest_1000	0.51	-1.9
1,085,640	+		Psest_1000	0.53	-0.6
1,085,641	-		Psest_1000	0.53	-1.1
1,085,641	-		Psest_1000	0.53	-0.3
1,085,641	-		Psest_1000	0.53	-2.6
1,085,641	-		Psest_1000	0.53	-2.3
1,085,641	-		Psest_1000	0.53	-2.3
1,085,641	-		Psest_1000	0.53	+0.8
1,085,661	-		Psest_1000	0.54	-1.2
1,085,662	+		Psest_1000	0.54	-1.3
1,085,662	+		Psest_1000	0.54	-0.9
1,085,662	+		Psest_1000	0.54	-2.7
1,085,662	+		Psest_1000	0.54	-1.4
1,085,663	-		Psest_1000	0.54	+1.5
1,085,663	-		Psest_1000	0.54	-0.0
1,085,663	-		Psest_1000	0.54	-1.3
1,085,663	-		Psest_1000	0.54	-1.1
1,085,663	-		Psest_1000	0.54	+0.4
1,085,663	-		Psest_1000	0.54	-1.2
1,085,663	-		Psest_1000	0.54	+1.2
1,085,663	-		Psest_1000	0.54	-1.8
1,085,663	-		Psest_1000	0.54	+2.1
1,085,663	-		Psest_1000	0.54	-1.9
1,085,664	+		Psest_1000	0.54	-0.9
1,085,664	+		Psest_1000	0.54	-1.4
1,085,664	+		Psest_1000	0.54	-1.7
1,085,665	-		Psest_1000	0.54	+2.2
1,085,665	-		Psest_1000	0.54	-3.3
1,085,665	-		Psest_1000	0.54	-1.4
1,085,665	-		Psest_1000	0.54	-1.6
1,085,665	-		Psest_1000	0.54	-1.0
1,085,665	-		Psest_1000	0.54	+3.0
1,085,665	-		Psest_1000	0.54	-1.2
1,085,665	-		Psest_1000	0.54	-1.9
1,085,868	+		Psest_1000	0.61	-1.4
1,085,868	+		Psest_1000	0.61	-0.7
1,085,868	+		Psest_1000	0.61	-0.6
1,085,868	+		Psest_1000	0.61	-0.9
1,085,868	+		Psest_1000	0.61	+1.4
1,085,868	+		Psest_1000	0.61	+0.4
1,085,869	-		Psest_1000	0.61	-2.0
1,085,869	-		Psest_1000	0.61	-1.5
1,085,869	-		Psest_1000	0.61	-2.7
1,085,869	-		Psest_1000	0.61	-1.6
1,085,869	-		Psest_1000	0.61	-1.9
1,085,935	-		Psest_1000	0.63	-0.3
1,085,935	-		Psest_1000	0.63	+0.5
1,085,935	-		Psest_1000	0.63	+0.3
1,085,935	-		Psest_1000	0.63	-0.6
1,086,111	+		Psest_1000	0.69	-0.6
1,086,112	-		Psest_1000	0.69	-0.4
1,086,112	-		Psest_1000	0.69	-1.1
1,086,189	+		Psest_1000	0.71	-1.1
1,086,189	+		Psest_1000	0.71	+1.2
1,086,190	-		Psest_1000	0.71	-0.9
1,086,190	-		Psest_1000	0.71	-1.4
1,086,190	-		Psest_1000	0.71	-1.0
1,086,258	+		Psest_1000	0.74	-0.6
1,086,258	+		Psest_1000	0.74	-1.7
1,086,258	+		Psest_1000	0.74	-1.6
1,086,258	+		Psest_1000	0.74	-1.7
1,086,258	+		Psest_1000	0.74	-0.9
1,086,259	-		Psest_1000	0.74	-0.8
1,086,259	-		Psest_1000	0.74	-0.7
1,086,259	-		Psest_1000	0.74	-3.6
1,086,259	-		Psest_1000	0.74	-2.8
1,086,259	-		Psest_1000	0.74	+1.1
1,086,259	-		Psest_1000	0.74	+0.2
1,086,259	-		Psest_1000	0.74	-1.1
1,086,259	-		Psest_1000	0.74	-1.6
1,086,259	-		Psest_1000	0.74	-0.3
1,086,259	-		Psest_1000	0.74	-1.1
1,086,259	-		Psest_1000	0.74	-3.1
1,086,334	+		Psest_1000	0.76	-1.4
1,086,335	-		Psest_1000	0.76	-1.2
1,086,409	-		Psest_1000	0.79	-2.1
1,086,409	-		Psest_1000	0.79	+0.7
1,086,409	-		Psest_1000	0.79	-0.6
1,086,409	-		Psest_1000	0.79	-0.7
1,086,556	-		Psest_1000	0.84	-0.6
1,086,738	+				-1.6
1,086,739	-				-1.2
1,086,766	-				-3.4
1,086,810	+				+0.4
1,086,811	-				-1.1
1,086,811	-				-1.4
1,086,811	-				-1.0
1,086,811	-				+0.8
1,086,811	-				-2.4
1,086,811	-				-2.1
1,086,841	-				-2.7
1,086,862	-				-1.6
1,086,882	+				-0.4
1,086,882	+				-2.0
1,086,883	-				-2.3
1,086,903	+				-1.1
1,086,904	-				-0.7
1,086,904	-				-1.1
1,086,904	-				+0.0
1,087,088	-		Psest_1001	0.40	-2.0
1,087,150	+		Psest_1001	0.75	+1.5
1,087,150	+		Psest_1001	0.75	+0.4
1,087,150	+		Psest_1001	0.75	+0.8
1,087,150	+		Psest_1001	0.75	+1.7
1,087,150	+		Psest_1001	0.75	+1.4
1,087,151	-		Psest_1001	0.76	+0.2
1,087,183	+				+0.2
1,087,184	-				+0.8
1,087,184	-				+0.3
1,087,187	+				-0.0
1,087,187	+				+0.5
1,087,187	+				-1.5
1,087,187	+				+2.7
1,087,187	+				+0.5
1,087,187	+				-1.4
1,087,187	+				+0.0
1,087,187	+				+2.2
1,087,188	-				-0.3
1,087,188	-				-0.8
1,087,188	-				-0.8
1,087,188	-				+0.1
1,087,188	-				-2.3
1,087,188	-				+0.3
1,087,188	-				-0.9
1,087,188	-				-0.4
1,087,188	-				+1.4
1,087,188	-				-0.7
1,087,188	-				+0.2
1,087,188	-				-0.2
1,087,188	-				-0.2
1,087,188	-				+2.1
1,087,188	-				-1.3
1,087,189	+				+0.4
1,087,189	+				-0.3
1,087,189	+				-0.1
1,087,189	+				+1.4
1,087,189	+				-0.1
1,087,189	+				-1.1
1,087,189	+				+0.4
1,087,189	+				+0.1
1,087,189	+				+1.4
1,087,189	+				+0.9
1,087,189	+				+1.2
1,087,189	+				+0.9
1,087,189	+				+1.2
1,087,189	+				+0.8
1,087,189	+				+0.3
1,087,189	+				+0.1
1,087,189	+				+0.1
1,087,189	+				+1.4
1,087,189	+				+1.6
1,087,189	+				+1.9
1,087,189	+				-1.1
1,087,189	+				-1.7
1,087,189	+				+2.0
1,087,189	+				+1.3
1,087,189	+				+0.6
1,087,189	+				+0.1
1,087,189	+				-1.0
1,087,189	+				-0.7
1,087,189	+				-0.2
1,087,189	+				+0.2
1,087,189	+				-2.3
1,087,189	+				-0.2
1,087,189	+				+0.1
1,087,189	+				-1.1
1,087,189	+				+0.4
1,087,189	+				+1.2
1,087,189	+				+2.2
1,087,189	+				-0.6
1,087,189	+				+2.4
1,087,189	+				+0.2
1,087,189	+				+1.4
1,087,189	+				-0.1
1,087,189	+				+1.2
1,087,189	+				+1.1
1,087,189	+				+0.2
1,087,189	+				+0.8
1,087,189	+				-0.4
1,087,189	+				-2.0
1,087,189	+				+0.9
1,087,189	+				+1.1
1,087,189	+				-0.6
1,087,189	+				-0.1
1,087,189	+				+2.0
1,087,189	+				+1.0
1,087,189	+				+1.7
1,087,189	+				+0.7
1,087,189	+				-0.0
1,087,189	+				-0.1
1,087,189	+				-0.3
1,087,189	+				+0.7
1,087,189	+				-1.0
1,087,189	+				-0.5
1,087,189	+				-1.3
1,087,189	+				+1.8
1,087,189	+				+1.5
1,087,189	+				+0.2
1,087,189	+				-0.6
1,087,189	+				+1.7
1,087,189	+				-0.2
1,087,189	+				-1.6
1,087,189	+				-1.1
1,087,189	+				-1.1
1,087,189	+				-0.4
1,087,189	+				+0.8
1,087,189	+				-0.9
1,087,190	-				-0.3
1,087,190	-				-0.6
1,087,190	-				+1.7
1,087,190	-				-1.2
1,087,190	-				-0.7
1,087,190	-				+0.3
1,087,190	-				-0.8
1,087,190	-				-0.5
1,087,190	-				+0.0
1,087,190	-				-0.2
1,087,190	-				-0.0
1,087,190	-				-1.1
1,087,190	-				+0.3
1,087,190	-				-1.0
1,087,190	-				-0.1
1,087,190	-				+1.2
1,087,190	-				-1.6
1,087,190	-				-0.3
1,087,190	-				-0.2
1,087,190	-				+0.6
1,087,190	-				-0.2
1,087,190	-				-1.8
1,087,190	-				-0.2
1,087,190	-				+0.5
1,087,190	-				-0.7
1,087,190	-				+2.4
1,087,190	-				+0.4
1,087,190	-				+0.3
1,087,190	-				+0.0
1,087,190	-				-0.1
1,087,190	-				+0.4
1,087,190	-				-0.3
1,087,190	-				-1.5
1,087,190	-				+2.1
1,087,190	-				-2.3
1,087,190	-				-0.8
1,087,190	-				+0.1
1,087,190	-				-0.0
1,087,190	-				-1.1
1,087,190	-				-1.2
1,087,190	-				+1.4
1,087,190	-				-0.7
1,087,190	-				+0.8
1,087,190	-				-0.1
1,087,190	-				+0.0
1,087,190	-				-2.0
1,087,190	-				+2.9
1,087,190	-				-0.8
1,087,190	-				-1.0
1,087,190	-				-0.8
1,087,190	-				-0.3
1,087,190	-				-0.4
1,087,190	-				-0.2
1,087,190	-				+0.4
1,087,190	-				+1.0
1,087,190	-				-0.9
1,087,190	-				+0.3
1,087,190	-				-0.6
1,087,190	-				+0.4
1,087,190	-				+0.1
1,087,190	-				+0.2
1,087,225	+				+0.9
1,087,492	+		Psest_1002	0.21	+2.5
1,087,582	+		Psest_1002	0.31	-1.1
1,087,582	+		Psest_1002	0.31	-1.2
1,087,771	+		Psest_1002	0.52	-1.4
1,087,886	+		Psest_1002	0.64	+0.2
1,087,886	+		Psest_1002	0.64	-0.3
1,087,886	+		Psest_1002	0.64	-0.5
1,087,887	-		Psest_1002	0.65	-0.1
1,087,887	-		Psest_1002	0.65	+3.2
1,087,887	-		Psest_1002	0.65	+1.1
1,087,894	+		Psest_1002	0.65	-0.3
1,087,894	+		Psest_1002	0.65	+1.2
1,087,895	-		Psest_1002	0.65	+0.8
1,087,895	-		Psest_1002	0.65	+0.8
1,087,895	-		Psest_1002	0.65	-0.8
1,087,990	+		Psest_1002	0.76	+0.1
1,087,991	-		Psest_1002	0.76	+0.9
1,087,991	-		Psest_1002	0.76	+0.6