Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0445

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0443 and Psest_0444 are separated by 127 nucleotidesPsest_0444 and Psest_0445 are separated by 111 nucleotidesPsest_0445 and Psest_0446 are separated by 110 nucleotidesPsest_0446 and Psest_0447 are separated by 108 nucleotides Psest_0443: Psest_0443 - methionine-S-sulfoxide reductase, at 483,611 to 484,156 _0443 Psest_0444: Psest_0444 - methionine-S-sulfoxide reductase, at 484,284 to 484,706 _0444 Psest_0445: Psest_0445 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 484,818 to 487,490 _0445 Psest_0446: Psest_0446 - hypothetical protein, at 487,601 to 488,128 _0446 Psest_0447: Psest_0447 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 488,237 to 490,240 _0447 Position (kb) 484 485 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 483.837 kb on - strand, within Psest_0443at 483.906 kb on - strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.019 kb on + strand, within Psest_0443at 484.020 kb on - strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.021 kb on + strand, within Psest_0443at 484.022 kb on - strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.029 kb on + strand, within Psest_0443at 484.030 kb on - strand, within Psest_0443at 484.059 kb on + strand, within Psest_0443at 484.136 kb on + strandat 484.169 kb on - strandat 484.169 kb on - strandat 484.231 kb on + strandat 484.231 kb on + strandat 484.232 kb on - strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.251 kb on + strandat 484.252 kb on - strandat 484.252 kb on - strandat 484.252 kb on - strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.255 kb on + strandat 484.285 kb on + strandat 484.285 kb on + strandat 484.290 kb on + strandat 484.290 kb on + strandat 484.291 kb on - strandat 484.296 kb on + strandat 484.296 kb on + strandat 484.296 kb on + strandat 484.314 kb on + strandat 484.390 kb on - strand, within Psest_0444at 484.441 kb on + strand, within Psest_0444at 484.442 kb on - strand, within Psest_0444at 484.471 kb on + strand, within Psest_0444at 484.548 kb on + strand, within Psest_0444at 484.549 kb on - strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.603 kb on + strand, within Psest_0444at 484.604 kb on - strand, within Psest_0444at 484.604 kb on - strand, within Psest_0444at 484.618 kb on - strand, within Psest_0444at 484.624 kb on - strand, within Psest_0444at 484.738 kb on + strandat 484.738 kb on + strandat 484.739 kb on - strandat 484.739 kb on - strandat 484.739 kb on - strandat 484.743 kb on + strandat 484.744 kb on - strandat 484.760 kb on + strandat 484.761 kb on - strandat 484.761 kb on - strandat 484.888 kb on + strandat 484.888 kb on + strandat 484.889 kb on - strandat 485.036 kb on + strandat 485.093 kb on - strand, within Psest_0445at 485.533 kb on + strand, within Psest_0445at 485.533 kb on + strand, within Psest_0445at 485.533 kb on + strand, within Psest_0445at 485.533 kb on + strand, within Psest_0445at 485.534 kb on - strand, within Psest_0445at 485.596 kb on + strand, within Psest_0445at 485.596 kb on + strand, within Psest_0445at 485.596 kb on + strand, within Psest_0445at 485.596 kb on + strand, within Psest_0445at 485.596 kb on + strand, within Psest_0445at 485.596 kb on + strand, within Psest_0445at 485.596 kb on + strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.597 kb on - strand, within Psest_0445at 485.930 kb on + strand, within Psest_0445at 486.062 kb on - strand, within Psest_0445at 486.062 kb on - strand, within Psest_0445at 486.097 kb on + strand, within Psest_0445at 486.097 kb on + strand, within Psest_0445at 486.097 kb on + strand, within Psest_0445at 486.097 kb on + strand, within Psest_0445at 486.098 kb on - strand, within Psest_0445at 486.113 kb on + strand, within Psest_0445at 486.113 kb on + strand, within Psest_0445at 486.113 kb on + strand, within Psest_0445at 486.114 kb on - strand, within Psest_0445at 486.151 kb on + strand, within Psest_0445at 486.151 kb on + strand, within Psest_0445at 486.151 kb on + strand, within Psest_0445at 486.152 kb on - strand, within Psest_0445at 486.152 kb on - strand, within Psest_0445at 486.152 kb on - strand, within Psest_0445at 486.152 kb on - strand, within Psest_0445at 486.152 kb on - strand, within Psest_0445at 486.163 kb on + strand, within Psest_0445at 486.163 kb on + strand, within Psest_0445at 486.163 kb on + strand, within Psest_0445at 486.163 kb on + strand, within Psest_0445at 486.163 kb on + strand, within Psest_0445at 486.164 kb on - strand, within Psest_0445at 486.164 kb on - strand, within Psest_0445at 486.164 kb on - strand, within Psest_0445at 486.164 kb on - strand, within Psest_0445at 486.164 kb on - strand, within Psest_0445at 486.164 kb on - strand, within Psest_0445at 486.221 kb on - strand, within Psest_0445at 486.403 kb on + strand, within Psest_0445at 486.403 kb on + strand, within Psest_0445at 486.404 kb on - strand, within Psest_0445at 486.404 kb on - strand, within Psest_0445at 486.404 kb on - strand, within Psest_0445at 486.404 kb on - strand, within Psest_0445at 486.404 kb on - strand, within Psest_0445at 486.404 kb on - strand, within Psest_0445at 486.482 kb on + strand, within Psest_0445at 486.482 kb on + strand, within Psest_0445at 486.483 kb on - strand, within Psest_0445at 486.802 kb on + strand, within Psest_0445at 486.802 kb on + strand, within Psest_0445at 486.802 kb on + strand, within Psest_0445at 486.802 kb on + strand, within Psest_0445at 486.802 kb on + strand, within Psest_0445at 486.803 kb on - strand, within Psest_0445at 486.803 kb on - strand, within Psest_0445at 486.886 kb on + strand, within Psest_0445at 486.886 kb on + strand, within Psest_0445at 486.886 kb on + strand, within Psest_0445at 486.886 kb on + strand, within Psest_0445at 486.989 kb on + strand, within Psest_0445at 486.989 kb on + strand, within Psest_0445at 486.989 kb on + strand, within Psest_0445at 486.989 kb on + strand, within Psest_0445at 486.989 kb on + strand, within Psest_0445at 487.118 kb on - strand, within Psest_0445at 487.141 kb on + strand, within Psest_0445at 487.248 kb on - strandat 487.479 kb on - strandat 487.482 kb on + strandat 487.482 kb on + strandat 487.482 kb on + strandat 487.483 kb on - strandat 487.483 kb on - strandat 487.483 kb on - strandat 487.510 kb on - strandat 487.510 kb on - strandat 487.510 kb on - strandat 487.571 kb on - strandat 487.575 kb on - strandat 487.581 kb on - strandat 487.635 kb on + strandat 487.636 kb on - strandat 487.721 kb on + strand, within Psest_0446at 487.721 kb on + strand, within Psest_0446at 487.722 kb on - strand, within Psest_0446at 487.722 kb on - strand, within Psest_0446at 487.746 kb on - strand, within Psest_0446at 487.746 kb on - strand, within Psest_0446at 487.746 kb on - strand, within Psest_0446at 487.746 kb on - strand, within Psest_0446at 487.789 kb on + strand, within Psest_0446at 487.789 kb on + strand, within Psest_0446at 487.790 kb on - strand, within Psest_0446at 487.790 kb on - strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.805 kb on + strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.806 kb on - strand, within Psest_0446at 487.824 kb on - strand, within Psest_0446at 487.974 kb on - strand, within Psest_0446at 487.983 kb on - strand, within Psest_0446at 488.005 kb on + strand, within Psest_0446at 488.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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483,837 - Psest_0443 0.41 +0.1
483,906 - Psest_0443 0.54 -0.2
484,019 + Psest_0443 0.75 +0.2
484,019 + Psest_0443 0.75 +0.7
484,019 + Psest_0443 0.75 +0.3
484,019 + Psest_0443 0.75 -0.6
484,019 + Psest_0443 0.75 -0.6
484,019 + Psest_0443 0.75 +0.7
484,019 + Psest_0443 0.75 -0.5
484,019 + Psest_0443 0.75 +0.2
484,020 - Psest_0443 0.75 +0.5
484,021 + Psest_0443 0.75 -2.4
484,021 + Psest_0443 0.75 -0.1
484,021 + Psest_0443 0.75 -0.9
484,021 + Psest_0443 0.75 -0.6
484,022 - Psest_0443 0.75 -0.3
484,029 + Psest_0443 0.77 -1.2
484,029 + Psest_0443 0.77 +0.4
484,029 + Psest_0443 0.77 -0.0
484,029 + Psest_0443 0.77 -0.1
484,029 + Psest_0443 0.77 -1.9
484,029 + Psest_0443 0.77 +0.2
484,029 + Psest_0443 0.77 -0.8
484,029 + Psest_0443 0.77 -0.2
484,029 + Psest_0443 0.77 +0.3
484,030 - Psest_0443 0.77 -0.2
484,059 + Psest_0443 0.82 -0.1
484,136 + +0.4
484,169 - +0.1
484,169 - -0.6
484,231 + +1.5
484,231 + -1.5
484,232 - -0.4
484,251 + -1.1
484,251 + +0.7
484,251 + -0.2
484,251 + -0.4
484,251 + +1.7
484,251 + -0.6
484,251 + -0.8
484,251 + +0.7
484,251 + +0.1
484,252 - -0.4
484,252 - -0.6
484,252 - +0.5
484,255 + -2.1
484,255 + -3.1
484,255 + -0.1
484,255 + +0.6
484,255 + -1.6
484,255 + -0.8
484,285 + -0.5
484,285 + -1.9
484,290 + -0.1
484,290 + +0.1
484,291 - -0.6
484,296 + +1.5
484,296 + -0.8
484,296 + +0.7
484,314 + -0.8
484,390 - Psest_0444 0.25 -0.5
484,441 + Psest_0444 0.37 -1.6
484,442 - Psest_0444 0.37 -1.5
484,471 + Psest_0444 0.44 -2.6
484,548 + Psest_0444 0.62 -0.2
484,549 - Psest_0444 0.63 -0.6
484,603 + Psest_0444 0.75 -0.2
484,603 + Psest_0444 0.75 +0.5
484,603 + Psest_0444 0.75 +2.2
484,603 + Psest_0444 0.75 +0.3
484,603 + Psest_0444 0.75 -0.2
484,603 + Psest_0444 0.75 +0.3
484,603 + Psest_0444 0.75 -0.6
484,604 - Psest_0444 0.76 +0.2
484,604 - Psest_0444 0.76 +0.6
484,618 - Psest_0444 0.79 -0.4
484,624 - Psest_0444 0.80 +0.4
484,738 + +1.4
484,738 + +0.1
484,739 - -1.6
484,739 - -0.2
484,739 - +0.1
484,743 + +1.8
484,744 - -0.2
484,760 + -1.7
484,761 - +1.8
484,761 - -0.3
484,888 + +0.1
484,888 + -0.7
484,889 - +0.1
485,036 + -0.6
485,093 - Psest_0445 0.10 +0.7
485,533 + Psest_0445 0.27 -1.3
485,533 + Psest_0445 0.27 -0.6
485,533 + Psest_0445 0.27 -2.5
485,533 + Psest_0445 0.27 -2.1
485,534 - Psest_0445 0.27 -0.4
485,596 + Psest_0445 0.29 +1.3
485,596 + Psest_0445 0.29 -2.2
485,596 + Psest_0445 0.29 +0.1
485,596 + Psest_0445 0.29 +1.4
485,596 + Psest_0445 0.29 -0.5
485,596 + Psest_0445 0.29 +0.8
485,596 + Psest_0445 0.29 -1.6
485,597 - Psest_0445 0.29 -1.8
485,597 - Psest_0445 0.29 -0.5
485,597 - Psest_0445 0.29 -2.5
485,597 - Psest_0445 0.29 -1.2
485,597 - Psest_0445 0.29 -3.1
485,597 - Psest_0445 0.29 -1.6
485,597 - Psest_0445 0.29 -0.5
485,597 - Psest_0445 0.29 -0.9
485,597 - Psest_0445 0.29 -1.6
485,597 - Psest_0445 0.29 -3.3
485,597 - Psest_0445 0.29 -0.1
485,930 + Psest_0445 0.42 -0.9
486,062 - Psest_0445 0.47 -0.9
486,062 - Psest_0445 0.47 -0.5
486,097 + Psest_0445 0.48 -3.3
486,097 + Psest_0445 0.48 -1.3
486,097 + Psest_0445 0.48 -3.0
486,097 + Psest_0445 0.48 -0.7
486,098 - Psest_0445 0.48 -0.8
486,113 + Psest_0445 0.48 -1.2
486,113 + Psest_0445 0.48 -1.1
486,113 + Psest_0445 0.48 -1.0
486,114 - Psest_0445 0.48 -1.1
486,151 + Psest_0445 0.50 +0.4
486,151 + Psest_0445 0.50 -0.1
486,151 + Psest_0445 0.50 -2.2
486,152 - Psest_0445 0.50 -2.0
486,152 - Psest_0445 0.50 -1.9
486,152 - Psest_0445 0.50 -0.7
486,152 - Psest_0445 0.50 -0.5
486,152 - Psest_0445 0.50 +0.3
486,163 + Psest_0445 0.50 -2.0
486,163 + Psest_0445 0.50 +0.1
486,163 + Psest_0445 0.50 -0.3
486,163 + Psest_0445 0.50 +0.5
486,163 + Psest_0445 0.50 -1.9
486,164 - Psest_0445 0.50 -0.0
486,164 - Psest_0445 0.50 +0.2
486,164 - Psest_0445 0.50 -0.7
486,164 - Psest_0445 0.50 -2.5
486,164 - Psest_0445 0.50 -1.2
486,164 - Psest_0445 0.50 -1.6
486,221 - Psest_0445 0.52 +0.1
486,403 + Psest_0445 0.59 -2.5
486,403 + Psest_0445 0.59 -0.3
486,404 - Psest_0445 0.59 -2.4
486,404 - Psest_0445 0.59 -1.3
486,404 - Psest_0445 0.59 -0.1
486,404 - Psest_0445 0.59 -1.3
486,404 - Psest_0445 0.59 -3.3
486,404 - Psest_0445 0.59 -0.9
486,482 + Psest_0445 0.62 -0.9
486,482 + Psest_0445 0.62 -1.9
486,483 - Psest_0445 0.62 -2.0
486,802 + Psest_0445 0.74 +0.5
486,802 + Psest_0445 0.74 -0.3
486,802 + Psest_0445 0.74 -1.7
486,802 + Psest_0445 0.74 -0.3
486,802 + Psest_0445 0.74 -1.8
486,803 - Psest_0445 0.74 -2.7
486,803 - Psest_0445 0.74 +1.7
486,886 + Psest_0445 0.77 -0.7
486,886 + Psest_0445 0.77 -0.3
486,886 + Psest_0445 0.77 -2.5
486,886 + Psest_0445 0.77 -0.7
486,989 + Psest_0445 0.81 +0.2
486,989 + Psest_0445 0.81 +0.3
486,989 + Psest_0445 0.81 -1.1
486,989 + Psest_0445 0.81 +0.3
486,989 + Psest_0445 0.81 -2.9
487,118 - Psest_0445 0.86 -0.3
487,141 + Psest_0445 0.87 +0.1
487,248 - -0.4
487,479 - -0.8
487,482 + -1.3
487,482 + -0.9
487,482 + -1.6
487,483 - +0.2
487,483 - -0.2
487,483 - +0.7
487,510 - +2.9
487,510 - +3.1
487,510 - +2.8
487,571 - +1.2
487,575 - +1.3
487,581 - +2.1
487,635 + -0.8
487,636 - +2.4
487,721 + Psest_0446 0.23 +0.1
487,721 + Psest_0446 0.23 -0.6
487,722 - Psest_0446 0.23 +0.6
487,722 - Psest_0446 0.23 +2.8
487,746 - Psest_0446 0.27 +2.2
487,746 - Psest_0446 0.27 +2.1
487,746 - Psest_0446 0.27 +1.8
487,746 - Psest_0446 0.27 +2.4
487,789 + Psest_0446 0.36 +0.3
487,789 + Psest_0446 0.36 -0.9
487,790 - Psest_0446 0.36 +2.0
487,790 - Psest_0446 0.36 +1.4
487,805 + Psest_0446 0.39 -0.7
487,805 + Psest_0446 0.39 -0.9
487,805 + Psest_0446 0.39 +0.0
487,805 + Psest_0446 0.39 -1.9
487,805 + Psest_0446 0.39 -1.3
487,805 + Psest_0446 0.39 -1.2
487,805 + Psest_0446 0.39 +0.1
487,805 + Psest_0446 0.39 -1.5
487,806 - Psest_0446 0.39 +2.1
487,806 - Psest_0446 0.39 +2.4
487,806 - Psest_0446 0.39 +2.3
487,806 - Psest_0446 0.39 +1.4
487,806 - Psest_0446 0.39 +1.7
487,806 - Psest_0446 0.39 +1.4
487,806 - Psest_0446 0.39 +1.9
487,806 - Psest_0446 0.39 +0.9
487,824 - Psest_0446 0.42 +0.9
487,974 - Psest_0446 0.71 +1.4
487,983 - Psest_0446 0.72 +0.7
488,005 + Psest_0446 0.77 -1.0
488,252 - +2.9

Or see this region's nucleotide sequence