Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2439 and Psest_2440 are separated by 38 nucleotides Psest_2440 and Psest_2441 are separated by 66 nucleotides
Psest_2439: Psest_2439 - 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) , at 2,607,195 to 2,608,289
_2439
Psest_2440: Psest_2440 - isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) , at 2,608,328 to 2,609,479
_2440
Psest_2441: Psest_2441 - hypothetical protein, at 2,609,546 to 2,610,103
_2441
Position (kb)
2608
2609
2610 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2607.468 kb on + strand, within Psest_2439 at 2607.469 kb on - strand, within Psest_2439 at 2607.483 kb on + strand, within Psest_2439 at 2607.483 kb on + strand, within Psest_2439 at 2607.484 kb on - strand, within Psest_2439 at 2607.602 kb on + strand, within Psest_2439 at 2607.625 kb on - strand, within Psest_2439 at 2607.648 kb on + strand, within Psest_2439 at 2607.648 kb on + strand, within Psest_2439 at 2607.648 kb on + strand, within Psest_2439 at 2607.649 kb on - strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.520 kb on - strand, within Psest_2440 at 2608.526 kb on + strand, within Psest_2440 at 2608.527 kb on - strand, within Psest_2440 at 2608.527 kb on - strand, within Psest_2440 at 2608.632 kb on - strand, within Psest_2440 at 2609.120 kb on + strand, within Psest_2440 at 2609.469 kb on - strand at 2609.469 kb on - strand at 2609.469 kb on - strand at 2609.475 kb on + strand at 2609.476 kb on - strand at 2609.477 kb on + strand at 2609.478 kb on - strand at 2609.669 kb on + strand, within Psest_2441 at 2609.724 kb on - strand, within Psest_2441 at 2609.735 kb on - strand, within Psest_2441 at 2609.735 kb on - strand, within Psest_2441 at 2609.859 kb on + strand, within Psest_2441 at 2609.859 kb on + strand, within Psest_2441 at 2609.859 kb on + strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.945 kb on + strand, within Psest_2441 at 2609.946 kb on - strand, within Psest_2441 at 2609.946 kb on - strand, within Psest_2441 at 2610.010 kb on + strand, within Psest_2441 at 2610.010 kb on + strand, within Psest_2441 at 2610.034 kb on - strand, within Psest_2441 at 2610.050 kb on + strand at 2610.239 kb on + strand at 2610.239 kb on + strand at 2610.239 kb on + strand at 2610.384 kb on + strand at 2610.384 kb on + strand at 2610.384 kb on + strand at 2610.384 kb on + strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.419 kb on + strand at 2610.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 2,607,468 + Psest_2439 0.25 -3.0 2,607,469 - Psest_2439 0.25 -1.1 2,607,483 + Psest_2439 0.26 -0.6 2,607,483 + Psest_2439 0.26 -2.0 2,607,484 - Psest_2439 0.26 -1.0 2,607,602 + Psest_2439 0.37 +0.2 2,607,625 - Psest_2439 0.39 -1.0 2,607,648 + Psest_2439 0.41 -1.0 2,607,648 + Psest_2439 0.41 -0.4 2,607,648 + Psest_2439 0.41 +0.0 2,607,649 - Psest_2439 0.41 -1.3 2,607,684 + Psest_2439 0.45 -1.0 2,607,684 + Psest_2439 0.45 -0.9 2,607,684 + Psest_2439 0.45 -0.1 2,607,684 + Psest_2439 0.45 -1.0 2,607,684 + Psest_2439 0.45 +0.2 2,607,684 + Psest_2439 0.45 -0.6 2,607,684 + Psest_2439 0.45 -1.7 2,607,684 + Psest_2439 0.45 -0.9 2,607,685 - Psest_2439 0.45 +0.8 2,607,685 - Psest_2439 0.45 -3.2 2,607,685 - Psest_2439 0.45 -1.9 2,607,685 - Psest_2439 0.45 -1.2 2,607,685 - Psest_2439 0.45 -1.4 2,607,685 - Psest_2439 0.45 -0.6 2,607,685 - Psest_2439 0.45 -0.9 2,607,685 - Psest_2439 0.45 -1.1 2,607,685 - Psest_2439 0.45 -1.9 2,607,685 - Psest_2439 0.45 -0.3 2,607,685 - Psest_2439 0.45 +0.1 2,607,685 - Psest_2439 0.45 -1.2 2,607,685 - Psest_2439 0.45 -1.1 2,607,685 - Psest_2439 0.45 -1.0 2,608,517 + Psest_2440 0.16 -1.0 2,608,517 + Psest_2440 0.16 -0.9 2,608,517 + Psest_2440 0.16 -0.7 2,608,517 + Psest_2440 0.16 -1.5 2,608,517 + Psest_2440 0.16 -2.2 2,608,517 + Psest_2440 0.16 -0.9 2,608,517 + Psest_2440 0.16 -1.7 2,608,517 + Psest_2440 0.16 -0.9 2,608,517 + Psest_2440 0.16 -2.1 2,608,518 - Psest_2440 0.16 -3.1 2,608,518 - Psest_2440 0.16 +1.1 2,608,518 - Psest_2440 0.16 -0.5 2,608,518 - Psest_2440 0.16 -1.3 2,608,518 - Psest_2440 0.16 +1.1 2,608,518 - Psest_2440 0.16 -1.7 2,608,520 - Psest_2440 0.17 -2.2 2,608,526 + Psest_2440 0.17 -0.8 2,608,527 - Psest_2440 0.17 -2.2 2,608,527 - Psest_2440 0.17 -0.5 2,608,632 - Psest_2440 0.26 -1.8 2,609,120 + Psest_2440 0.69 -2.6 2,609,469 - +0.1 2,609,469 - -0.3 2,609,469 - -1.2 2,609,475 + -1.1 2,609,476 - -2.0 2,609,477 + +0.4 2,609,478 - +1.3 2,609,669 + Psest_2441 0.22 +1.1 2,609,724 - Psest_2441 0.32 +0.0 2,609,735 - Psest_2441 0.34 -0.5 2,609,735 - Psest_2441 0.34 -0.1 2,609,859 + Psest_2441 0.56 -0.9 2,609,859 + Psest_2441 0.56 +1.2 2,609,859 + Psest_2441 0.56 +0.6 2,609,860 - Psest_2441 0.56 +0.4 2,609,860 - Psest_2441 0.56 +1.0 2,609,860 - Psest_2441 0.56 -0.1 2,609,860 - Psest_2441 0.56 -0.4 2,609,860 - Psest_2441 0.56 +0.3 2,609,860 - Psest_2441 0.56 -0.4 2,609,860 - Psest_2441 0.56 +0.3 2,609,860 - Psest_2441 0.56 +0.3 2,609,860 - Psest_2441 0.56 +0.4 2,609,860 - Psest_2441 0.56 +0.5 2,609,860 - Psest_2441 0.56 -0.1 2,609,945 + Psest_2441 0.72 -1.2 2,609,946 - Psest_2441 0.72 -1.1 2,609,946 - Psest_2441 0.72 -0.4 2,610,010 + Psest_2441 0.83 +2.2 2,610,010 + Psest_2441 0.83 -0.2 2,610,034 - Psest_2441 0.87 -0.6 2,610,050 + +0.9 2,610,239 + +0.1 2,610,239 + +1.8 2,610,239 + -0.9 2,610,384 + -2.9 2,610,384 + -1.3 2,610,384 + -0.2 2,610,384 + -0.0 2,610,385 - -1.3 2,610,385 - +0.3 2,610,385 - +0.8 2,610,385 - -1.1 2,610,385 - +0.2 2,610,385 - -3.1 2,610,419 + +0.0 2,610,468 - +0.1
Or see this region's nucleotide sequence