Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0136 and Psest_0137 overlap by 4 nucleotides Psest_0137 and Psest_0138 are separated by 64 nucleotides Psest_0138 and Psest_0139 are separated by 15 nucleotides
Psest_0136: Psest_0136 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 135,761 to 136,450
_0136
Psest_0137: Psest_0137 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 136,447 to 137,142
_0137
Psest_0138: Psest_0138 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 137,207 to 137,962
_0138
Psest_0139: Psest_0139 - ABC-type histidine transport system, ATPase component, at 137,978 to 138,751
_0139
Position (kb) 137
138 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 136.230 kb on + strand, within Psest_0136 at 136.230 kb on + strand, within Psest_0136 at 136.233 kb on + strand, within Psest_0136 at 136.233 kb on + strand, within Psest_0136 at 136.233 kb on + strand, within Psest_0136 at 136.233 kb on + strand, within Psest_0136 at 136.234 kb on - strand, within Psest_0136 at 136.234 kb on - strand, within Psest_0136 at 136.234 kb on - strand, within Psest_0136 at 136.234 kb on - strand, within Psest_0136 at 136.234 kb on - strand, within Psest_0136 at 136.284 kb on + strand, within Psest_0136 at 136.285 kb on - strand, within Psest_0136 at 136.285 kb on - strand, within Psest_0136 at 136.285 kb on - strand, within Psest_0136 at 136.417 kb on + strand at 136.417 kb on + strand at 136.418 kb on - strand at 136.418 kb on - strand at 136.418 kb on - strand at 136.418 kb on - strand at 136.418 kb on - strand at 136.418 kb on - strand at 136.500 kb on + strand at 136.532 kb on + strand, within Psest_0137 at 136.532 kb on + strand, within Psest_0137 at 136.532 kb on + strand, within Psest_0137 at 136.532 kb on + strand, within Psest_0137 at 136.532 kb on + strand, within Psest_0137 at 136.533 kb on - strand, within Psest_0137 at 136.533 kb on - strand, within Psest_0137 at 136.533 kb on - strand, within Psest_0137 at 136.533 kb on - strand, within Psest_0137 at 136.630 kb on + strand, within Psest_0137 at 136.630 kb on + strand, within Psest_0137 at 136.630 kb on + strand, within Psest_0137 at 136.631 kb on - strand, within Psest_0137 at 136.631 kb on - strand, within Psest_0137 at 136.631 kb on - strand, within Psest_0137 at 136.631 kb on - strand, within Psest_0137 at 136.928 kb on + strand, within Psest_0137 at 136.928 kb on + strand, within Psest_0137 at 136.928 kb on + strand, within Psest_0137 at 136.928 kb on + strand, within Psest_0137 at 136.929 kb on - strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.979 kb on + strand, within Psest_0137 at 136.980 kb on - strand, within Psest_0137 at 136.980 kb on - strand, within Psest_0137 at 136.983 kb on + strand, within Psest_0137 at 137.009 kb on + strand, within Psest_0137 at 137.010 kb on - strand, within Psest_0137 at 137.142 kb on + strand at 137.142 kb on + strand at 137.143 kb on - strand at 137.143 kb on - strand at 137.143 kb on - strand at 137.211 kb on + strand at 137.211 kb on + strand at 137.212 kb on - strand at 137.212 kb on - strand at 137.229 kb on + strand at 137.229 kb on + strand at 137.229 kb on + strand at 137.229 kb on + strand at 137.229 kb on + strand at 137.229 kb on + strand at 137.229 kb on + strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.230 kb on - strand at 137.250 kb on + strand at 137.250 kb on + strand at 137.250 kb on + strand at 137.250 kb on + strand at 137.250 kb on + strand at 137.250 kb on + strand at 137.250 kb on + strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.251 kb on - strand at 137.464 kb on - strand, within Psest_0138 at 137.485 kb on - strand, within Psest_0138 at 137.577 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.637 kb on + strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.638 kb on - strand, within Psest_0138 at 137.640 kb on + strand, within Psest_0138 at 137.640 kb on + strand, within Psest_0138 at 137.640 kb on + strand, within Psest_0138 at 137.641 kb on - strand, within Psest_0138 at 137.641 kb on - strand, within Psest_0138 at 137.641 kb on - strand, within Psest_0138 at 137.641 kb on - strand, within Psest_0138 at 137.641 kb on - strand, within Psest_0138 at 137.641 kb on - strand, within Psest_0138 at 137.803 kb on + strand, within Psest_0138 at 137.804 kb on - strand, within Psest_0138 at 137.882 kb on + strand, within Psest_0138 at 137.950 kb on + strand at 137.950 kb on + strand at 137.950 kb on + strand at 137.950 kb on + strand at 137.950 kb on + strand at 137.950 kb on + strand at 137.950 kb on + strand at 137.950 kb on + strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.951 kb on - strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.952 kb on + strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.953 kb on - strand at 137.979 kb on + strand at 137.980 kb on - strand at 138.004 kb on + strand at 138.005 kb on - strand at 138.032 kb on + strand at 138.032 kb on + strand at 138.032 kb on + strand at 138.033 kb on - strand at 138.033 kb on - strand at 138.033 kb on - strand at 138.095 kb on + strand, within Psest_0139 at 138.096 kb on - strand, within Psest_0139 at 138.136 kb on + strand, within Psest_0139 at 138.136 kb on + strand, within Psest_0139 at 138.136 kb on + strand, within Psest_0139 at 138.137 kb on - strand, within Psest_0139 at 138.595 kb on + strand, within Psest_0139 at 138.595 kb on + strand, within Psest_0139 at 138.595 kb on + strand, within Psest_0139 at 138.595 kb on + strand, within Psest_0139 at 138.596 kb on - strand, within Psest_0139 at 138.596 kb on - strand, within Psest_0139 at 138.764 kb on + strand at 138.764 kb on + strand at 138.765 kb on - strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.791 kb on + strand at 138.792 kb on - strand at 138.792 kb on - strand at 138.792 kb on - strand at 138.792 kb on - strand at 138.792 kb on - strand at 138.792 kb on - strand at 138.792 kb on - strand at 138.795 kb on + strand at 138.795 kb on + strand at 138.795 kb on + strand at 138.795 kb on + strand at 138.795 kb on + strand at 138.796 kb on - strand at 138.796 kb on - strand at 138.796 kb on - strand at 138.849 kb on + strand at 138.849 kb on + strand at 138.850 kb on - strand at 138.850 kb on - strand at 138.850 kb on - strand at 138.850 kb on - strand at 138.850 kb on - strand at 138.943 kb on + strand at 138.943 kb on + strand at 138.943 kb on + strand at 138.943 kb on + strand at 138.943 kb on + strand at 138.944 kb on - strand at 138.944 kb on - strand at 138.944 kb on - strand at 138.944 kb on - strand at 138.944 kb on - strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.945 kb on + strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand at 138.946 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 136,230 + Psest_0136 0.68 +0.8 136,230 + Psest_0136 0.68 -0.8 136,233 + Psest_0136 0.68 -3.8 136,233 + Psest_0136 0.68 -1.0 136,233 + Psest_0136 0.68 -2.1 136,233 + Psest_0136 0.68 -1.9 136,234 - Psest_0136 0.69 -0.7 136,234 - Psest_0136 0.69 +1.5 136,234 - Psest_0136 0.69 +1.5 136,234 - Psest_0136 0.69 -1.8 136,234 - Psest_0136 0.69 +0.8 136,284 + Psest_0136 0.76 +0.2 136,285 - Psest_0136 0.76 +0.8 136,285 - Psest_0136 0.76 -0.3 136,285 - Psest_0136 0.76 -1.5 136,417 + -0.3 136,417 + -0.6 136,418 - -2.9 136,418 - -2.2 136,418 - -1.7 136,418 - -1.7 136,418 - -1.4 136,418 - -0.2 136,500 + -3.0 136,532 + Psest_0137 0.12 -2.4 136,532 + Psest_0137 0.12 -2.0 136,532 + Psest_0137 0.12 -0.6 136,532 + Psest_0137 0.12 +0.0 136,532 + Psest_0137 0.12 -0.2 136,533 - Psest_0137 0.12 -2.3 136,533 - Psest_0137 0.12 -2.0 136,533 - Psest_0137 0.12 +0.3 136,533 - Psest_0137 0.12 -2.0 136,630 + Psest_0137 0.26 -0.8 136,630 + Psest_0137 0.26 +0.5 136,630 + Psest_0137 0.26 -0.3 136,631 - Psest_0137 0.26 -2.1 136,631 - Psest_0137 0.26 -1.9 136,631 - Psest_0137 0.26 -3.2 136,631 - Psest_0137 0.26 -3.3 136,928 + Psest_0137 0.69 -0.5 136,928 + Psest_0137 0.69 +0.1 136,928 + Psest_0137 0.69 -1.5 136,928 + Psest_0137 0.69 -0.3 136,929 - Psest_0137 0.69 -1.1 136,979 + Psest_0137 0.76 -1.1 136,979 + Psest_0137 0.76 -1.4 136,979 + Psest_0137 0.76 -1.9 136,979 + Psest_0137 0.76 -2.1 136,979 + Psest_0137 0.76 +0.9 136,979 + Psest_0137 0.76 -0.3 136,979 + Psest_0137 0.76 -1.9 136,979 + Psest_0137 0.76 -1.5 136,980 - Psest_0137 0.77 -1.0 136,980 - Psest_0137 0.77 -2.0 136,983 + Psest_0137 0.77 -0.3 137,009 + Psest_0137 0.81 -2.5 137,010 - Psest_0137 0.81 -1.1 137,142 + -2.1 137,142 + -0.8 137,143 - +0.0 137,143 - +0.2 137,143 - +0.8 137,211 + -0.3 137,211 + -0.7 137,212 - -0.8 137,212 - +1.0 137,229 + -2.1 137,229 + -1.9 137,229 + -0.1 137,229 + +0.1 137,229 + -2.0 137,229 + -2.4 137,229 + -0.9 137,230 - +0.9 137,230 - -0.6 137,230 - -0.9 137,230 - +1.3 137,230 - -1.2 137,230 - +1.0 137,230 - -0.9 137,230 - -1.4 137,230 - -0.2 137,230 - -2.7 137,230 - -2.3 137,250 + -2.9 137,250 + -2.9 137,250 + -0.5 137,250 + -0.3 137,250 + -0.6 137,250 + -0.8 137,250 + +1.7 137,251 - +0.3 137,251 - -1.2 137,251 - -0.3 137,251 - -2.5 137,251 - -0.9 137,251 - -2.0 137,251 - -2.7 137,251 - -1.7 137,251 - -2.1 137,251 - -1.4 137,251 - -1.4 137,251 - -0.5 137,251 - -0.5 137,251 - +0.8 137,251 - +0.1 137,251 - -1.8 137,464 - Psest_0138 0.34 -0.4 137,485 - Psest_0138 0.37 -2.3 137,577 + Psest_0138 0.49 -0.1 137,637 + Psest_0138 0.57 -1.9 137,637 + Psest_0138 0.57 -1.2 137,637 + Psest_0138 0.57 -0.9 137,637 + Psest_0138 0.57 -1.2 137,637 + Psest_0138 0.57 +0.0 137,637 + Psest_0138 0.57 -1.4 137,637 + Psest_0138 0.57 -1.7 137,637 + Psest_0138 0.57 -3.8 137,638 - Psest_0138 0.57 -1.4 137,638 - Psest_0138 0.57 -0.3 137,638 - Psest_0138 0.57 -1.3 137,638 - Psest_0138 0.57 -2.4 137,638 - Psest_0138 0.57 -0.4 137,638 - Psest_0138 0.57 -1.6 137,638 - Psest_0138 0.57 +0.2 137,638 - Psest_0138 0.57 -1.7 137,640 + Psest_0138 0.57 -0.9 137,640 + Psest_0138 0.57 -1.0 137,640 + Psest_0138 0.57 -1.4 137,641 - Psest_0138 0.57 -1.2 137,641 - Psest_0138 0.57 -1.2 137,641 - Psest_0138 0.57 -0.7 137,641 - Psest_0138 0.57 -1.6 137,641 - Psest_0138 0.57 +0.4 137,641 - Psest_0138 0.57 -0.6 137,803 + Psest_0138 0.79 -2.0 137,804 - Psest_0138 0.79 -1.1 137,882 + Psest_0138 0.89 -1.5 137,950 + +0.1 137,950 + -1.4 137,950 + -1.2 137,950 + -2.5 137,950 + -2.0 137,950 + -2.1 137,950 + -0.8 137,950 + -1.5 137,951 - -0.1 137,951 - +0.3 137,951 - -2.2 137,951 - -0.6 137,951 - +0.3 137,951 - -3.6 137,951 - -1.5 137,951 - -1.5 137,951 - +0.2 137,952 + -2.3 137,952 + +0.2 137,952 + -1.6 137,952 + +1.3 137,952 + -1.1 137,952 + -2.1 137,952 + -0.5 137,952 + +1.1 137,952 + -4.2 137,952 + -3.0 137,952 + -1.2 137,952 + +1.4 137,952 + -2.4 137,953 - -1.3 137,953 - -0.3 137,953 - +0.1 137,953 - +0.2 137,953 - +0.1 137,953 - -1.5 137,953 - +0.2 137,953 - +0.6 137,953 - -0.5 137,953 - -0.6 137,953 - +0.3 137,953 - -1.7 137,953 - -2.7 137,979 + -1.0 137,980 - +1.9 138,004 + -2.3 138,005 - -0.8 138,032 + -0.9 138,032 + +0.0 138,032 + -1.5 138,033 - -0.9 138,033 - +0.4 138,033 - +0.8 138,095 + Psest_0139 0.15 -0.2 138,096 - Psest_0139 0.15 -2.1 138,136 + Psest_0139 0.20 -0.5 138,136 + Psest_0139 0.20 +0.2 138,136 + Psest_0139 0.20 -0.4 138,137 - Psest_0139 0.21 -3.5 138,595 + Psest_0139 0.80 +0.5 138,595 + Psest_0139 0.80 -0.4 138,595 + Psest_0139 0.80 -0.5 138,595 + Psest_0139 0.80 -1.4 138,596 - Psest_0139 0.80 -0.8 138,596 - Psest_0139 0.80 -2.3 138,764 + -1.8 138,764 + +2.9 138,765 - -0.0 138,791 + -1.7 138,791 + -2.2 138,791 + -4.2 138,791 + -3.2 138,791 + +1.8 138,791 + -1.4 138,791 + -1.3 138,791 + -1.5 138,791 + -2.0 138,792 - -0.3 138,792 - -0.2 138,792 - -0.8 138,792 - -1.3 138,792 - +0.0 138,792 - -0.9 138,792 - +0.0 138,795 + -1.4 138,795 + +0.1 138,795 + -0.4 138,795 + -0.6 138,795 + -2.5 138,796 - +0.6 138,796 - +1.8 138,796 - -2.0 138,849 + -1.0 138,849 + -1.4 138,850 - -0.9 138,850 - -0.1 138,850 - +2.3 138,850 - -1.0 138,850 - -1.1 138,943 + -1.3 138,943 + -0.7 138,943 + -0.2 138,943 + -2.2 138,943 + -1.3 138,944 - -0.8 138,944 - +0.8 138,944 - +0.4 138,944 - +1.2 138,944 - +0.2 138,945 + -0.8 138,945 + -0.3 138,945 + -0.2 138,945 + -1.1 138,945 + +1.6 138,945 + -0.7 138,945 + +1.0 138,945 + +0.1 138,945 + -1.7 138,945 + +0.8 138,945 + +1.8 138,945 + -0.6 138,945 + +0.9 138,946 - +0.2 138,946 - +1.7 138,946 - -0.5 138,946 - -1.3 138,946 - -1.7 138,946 - +0.2 138,946 - +0.2 138,946 - +0.9 138,946 - +0.6 138,946 - -0.8 138,946 - +0.2 138,946 - +0.6 138,946 - -1.5 138,946 - -0.1 138,946 - +0.4 138,946 - +0.4 138,946 - +0.8
Or see this region's nucleotide sequence