Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0091

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0090 and Psest_0091 overlap by 11 nucleotidesPsest_0091 and Psest_0092 are separated by 11 nucleotidesPsest_0092 and Psest_0093 overlap by 4 nucleotides Psest_0090: Psest_0090 - phosphonate metabolism protein PhnM, at 90,952 to 92,097 _0090 Psest_0091: Psest_0091 - phosphonate C-P lyase system protein PhnL, at 92,087 to 92,791 _0091 Psest_0092: Psest_0092 - phosphonate C-P lyase system protein PhnK, at 92,803 to 93,615 _0092 Psest_0093: Psest_0093 - Uncharacterized enzyme of phosphonate metabolism, at 93,612 to 94,481 _0093 Position (kb) 92 93Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 91.182 kb on - strand, within Psest_0090at 91.374 kb on + strand, within Psest_0090at 91.529 kb on + strand, within Psest_0090at 91.529 kb on + strand, within Psest_0090at 91.529 kb on + strand, within Psest_0090at 91.530 kb on - strand, within Psest_0090at 91.530 kb on - strand, within Psest_0090at 91.530 kb on - strand, within Psest_0090at 91.530 kb on - strand, within Psest_0090at 91.530 kb on - strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.541 kb on + strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.542 kb on - strand, within Psest_0090at 91.544 kb on + strand, within Psest_0090at 91.545 kb on - strand, within Psest_0090at 91.554 kb on - strand, within Psest_0090at 92.080 kb on + strandat 92.080 kb on + strandat 92.080 kb on + strandat 92.081 kb on - strandat 92.081 kb on - strandat 92.503 kb on - strand, within Psest_0091at 92.531 kb on + strand, within Psest_0091at 92.531 kb on + strand, within Psest_0091at 92.532 kb on - strand, within Psest_0091at 92.532 kb on - strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.610 kb on + strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.611 kb on - strand, within Psest_0091at 92.620 kb on - strand, within Psest_0091at 92.838 kb on + strandat 92.839 kb on - strandat 92.839 kb on - strandat 92.840 kb on + strandat 93.386 kb on + strand, within Psest_0092at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093at 93.715 kb on + strand, within Psest_0093

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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91,182 - Psest_0090 0.20 -0.2
91,374 + Psest_0090 0.37 +0.9
91,529 + Psest_0090 0.50 +0.1
91,529 + Psest_0090 0.50 -1.1
91,529 + Psest_0090 0.50 +0.5
91,530 - Psest_0090 0.50 +0.1
91,530 - Psest_0090 0.50 +1.5
91,530 - Psest_0090 0.50 +0.0
91,530 - Psest_0090 0.50 -1.8
91,530 - Psest_0090 0.50 -0.2
91,541 + Psest_0090 0.51 -0.3
91,541 + Psest_0090 0.51 -0.7
91,541 + Psest_0090 0.51 +1.3
91,541 + Psest_0090 0.51 +1.5
91,541 + Psest_0090 0.51 -0.9
91,541 + Psest_0090 0.51 +0.0
91,541 + Psest_0090 0.51 +0.9
91,541 + Psest_0090 0.51 -0.0
91,541 + Psest_0090 0.51 +0.1
91,541 + Psest_0090 0.51 -0.9
91,541 + Psest_0090 0.51 +1.3
91,541 + Psest_0090 0.51 -0.1
91,541 + Psest_0090 0.51 -0.3
91,541 + Psest_0090 0.51 -1.1
91,541 + Psest_0090 0.51 -0.0
91,541 + Psest_0090 0.51 +0.9
91,541 + Psest_0090 0.51 -1.4
91,541 + Psest_0090 0.51 -1.2
91,541 + Psest_0090 0.51 +1.1
91,541 + Psest_0090 0.51 +0.1
91,541 + Psest_0090 0.51 -0.4
91,541 + Psest_0090 0.51 +0.1
91,541 + Psest_0090 0.51 -0.0
91,541 + Psest_0090 0.51 -4.4
91,541 + Psest_0090 0.51 -0.0
91,542 - Psest_0090 0.51 +0.2
91,542 - Psest_0090 0.51 -1.5
91,542 - Psest_0090 0.51 -1.7
91,542 - Psest_0090 0.51 -0.1
91,542 - Psest_0090 0.51 -0.0
91,542 - Psest_0090 0.51 -1.4
91,542 - Psest_0090 0.51 -1.1
91,542 - Psest_0090 0.51 +0.0
91,542 - Psest_0090 0.51 +0.4
91,542 - Psest_0090 0.51 +0.8
91,542 - Psest_0090 0.51 -0.1
91,542 - Psest_0090 0.51 +0.3
91,542 - Psest_0090 0.51 -0.8
91,542 - Psest_0090 0.51 -0.3
91,542 - Psest_0090 0.51 -1.8
91,542 - Psest_0090 0.51 +0.0
91,542 - Psest_0090 0.51 +0.1
91,542 - Psest_0090 0.51 -1.8
91,542 - Psest_0090 0.51 -0.7
91,542 - Psest_0090 0.51 +0.1
91,542 - Psest_0090 0.51 -0.8
91,542 - Psest_0090 0.51 -0.9
91,542 - Psest_0090 0.51 -0.6
91,542 - Psest_0090 0.51 +0.2
91,542 - Psest_0090 0.51 +0.3
91,542 - Psest_0090 0.51 -2.4
91,542 - Psest_0090 0.51 -1.3
91,542 - Psest_0090 0.51 +0.1
91,542 - Psest_0090 0.51 +2.0
91,542 - Psest_0090 0.51 +0.7
91,542 - Psest_0090 0.51 -3.0
91,544 + Psest_0090 0.52 -0.9
91,545 - Psest_0090 0.52 -0.0
91,554 - Psest_0090 0.53 -1.7
92,080 + +0.5
92,080 + +0.6
92,080 + +0.5
92,081 - -1.5
92,081 - +1.0
92,503 - Psest_0091 0.59 -0.4
92,531 + Psest_0091 0.63 -0.3
92,531 + Psest_0091 0.63 -1.5
92,532 - Psest_0091 0.63 -2.1
92,532 - Psest_0091 0.63 -0.5
92,610 + Psest_0091 0.74 -0.6
92,610 + Psest_0091 0.74 +0.4
92,610 + Psest_0091 0.74 -1.2
92,610 + Psest_0091 0.74 -2.1
92,610 + Psest_0091 0.74 +0.2
92,610 + Psest_0091 0.74 -0.2
92,611 - Psest_0091 0.74 -0.2
92,611 - Psest_0091 0.74 -2.5
92,611 - Psest_0091 0.74 -1.6
92,611 - Psest_0091 0.74 -1.9
92,620 - Psest_0091 0.76 -0.2
92,838 + +0.2
92,839 - -1.3
92,839 - -1.5
92,840 + +0.5
93,386 + Psest_0092 0.72 -0.3
93,715 + Psest_0093 0.12 -0.5
93,715 + Psest_0093 0.12 +2.2
93,715 + Psest_0093 0.12 +1.0

Or see this region's nucleotide sequence