Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0529 and Psest_0530 are separated by 9 nucleotides Psest_0530 and Psest_0531 overlap by 8 nucleotides Psest_0531 and Psest_0532 overlap by 41 nucleotides
Psest_0529: Psest_0529 - Putative Mg2+ and Co2+ transporter CorC, at 582,835 to 583,677
_0529
Psest_0530: Psest_0530 - metalloprotein, YbeY/UPF0054 family, at 583,687 to 584,169
_0530
Psest_0531: Psest_0531 - Phosphate starvation-inducible protein PhoH, predicted ATPase, at 584,162 to 585,328
_0531
Psest_0532: Psest_0532 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 585,288 to 586,601
_0532
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 583.489 kb on + strand, within Psest_0529 at 583.489 kb on + strand, within Psest_0529 at 583.490 kb on - strand, within Psest_0529 at 583.490 kb on - strand, within Psest_0529 at 583.586 kb on - strand, within Psest_0529 at 583.586 kb on - strand, within Psest_0529 at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 583.730 kb on + strand at 584.230 kb on - strand at 584.267 kb on + strand at 584.267 kb on + strand at 584.267 kb on + strand at 584.268 kb on - strand at 584.268 kb on - strand at 584.318 kb on + strand, within Psest_0531 at 584.319 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.506 kb on - strand, within Psest_0531 at 584.557 kb on - strand, within Psest_0531 at 584.557 kb on - strand, within Psest_0531 at 584.557 kb on - strand, within Psest_0531 at 584.590 kb on - strand, within Psest_0531 at 584.590 kb on - strand, within Psest_0531 at 584.590 kb on - strand, within Psest_0531 at 584.676 kb on - strand, within Psest_0531 at 584.676 kb on - strand, within Psest_0531 at 584.693 kb on + strand, within Psest_0531 at 584.694 kb on - strand, within Psest_0531 at 584.717 kb on + strand, within Psest_0531 at 584.717 kb on + strand, within Psest_0531 at 584.718 kb on - strand, within Psest_0531 at 584.740 kb on - strand, within Psest_0531 at 584.740 kb on - strand, within Psest_0531 at 584.806 kb on - strand, within Psest_0531 at 584.806 kb on - strand, within Psest_0531 at 584.806 kb on - strand, within Psest_0531 at 584.917 kb on - strand, within Psest_0531 at 584.917 kb on - strand, within Psest_0531 at 585.156 kb on - strand, within Psest_0531 at 585.156 kb on - strand, within Psest_0531 at 585.156 kb on - strand, within Psest_0531 at 585.177 kb on - strand, within Psest_0531 at 585.214 kb on + strand at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.760 kb on + strand, within Psest_0532 at 585.761 kb on - strand, within Psest_0532 at 585.761 kb on - strand, within Psest_0532 at 585.761 kb on - strand, within Psest_0532 at 585.819 kb on + strand, within Psest_0532 at 585.820 kb on - strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.835 kb on + strand, within Psest_0532 at 585.836 kb on - strand, within Psest_0532 at 585.836 kb on - strand, within Psest_0532 at 586.100 kb on - strand, within Psest_0532 at 586.100 kb on - strand, within Psest_0532 at 586.123 kb on + strand, within Psest_0532 at 586.123 kb on + strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532 at 586.124 kb on - strand, within Psest_0532
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 583,489 + Psest_0529 0.78 +0.3 583,489 + Psest_0529 0.78 -0.1 583,490 - Psest_0529 0.78 -0.5 583,490 - Psest_0529 0.78 -3.0 583,586 - Psest_0529 0.89 -0.2 583,586 - Psest_0529 0.89 -1.3 583,730 + -0.2 583,730 + +0.5 583,730 + +0.4 583,730 + -1.2 583,730 + -0.7 583,730 + -0.8 584,230 - -0.5 584,267 + -1.4 584,267 + +0.8 584,267 + -0.2 584,268 - +0.1 584,268 - +0.2 584,318 + Psest_0531 0.13 +0.2 584,319 - Psest_0531 0.13 -1.4 584,506 - Psest_0531 0.29 +0.2 584,506 - Psest_0531 0.29 -0.7 584,506 - Psest_0531 0.29 +0.5 584,506 - Psest_0531 0.29 -0.7 584,557 - Psest_0531 0.34 +0.3 584,557 - Psest_0531 0.34 -1.8 584,557 - Psest_0531 0.34 -1.5 584,590 - Psest_0531 0.37 +0.6 584,590 - Psest_0531 0.37 -3.2 584,590 - Psest_0531 0.37 -1.2 584,676 - Psest_0531 0.44 -0.8 584,676 - Psest_0531 0.44 -0.2 584,693 + Psest_0531 0.46 +1.8 584,694 - Psest_0531 0.46 -1.0 584,717 + Psest_0531 0.48 -0.2 584,717 + Psest_0531 0.48 +1.2 584,718 - Psest_0531 0.48 -2.0 584,740 - Psest_0531 0.50 +0.8 584,740 - Psest_0531 0.50 -0.8 584,806 - Psest_0531 0.55 -1.2 584,806 - Psest_0531 0.55 -1.1 584,806 - Psest_0531 0.55 +0.5 584,917 - Psest_0531 0.65 -3.5 584,917 - Psest_0531 0.65 -0.5 585,156 - Psest_0531 0.85 -0.1 585,156 - Psest_0531 0.85 -1.3 585,156 - Psest_0531 0.85 -1.7 585,177 - Psest_0531 0.87 -1.5 585,214 + +0.1 585,760 + Psest_0532 0.36 -0.7 585,760 + Psest_0532 0.36 +1.3 585,760 + Psest_0532 0.36 -0.8 585,760 + Psest_0532 0.36 -0.8 585,760 + Psest_0532 0.36 +0.2 585,761 - Psest_0532 0.36 -0.2 585,761 - Psest_0532 0.36 +1.1 585,761 - Psest_0532 0.36 +0.8 585,819 + Psest_0532 0.40 -1.7 585,820 - Psest_0532 0.40 +0.2 585,835 + Psest_0532 0.42 +0.3 585,835 + Psest_0532 0.42 +0.4 585,835 + Psest_0532 0.42 +0.7 585,835 + Psest_0532 0.42 +0.5 585,835 + Psest_0532 0.42 +0.3 585,836 - Psest_0532 0.42 +0.6 585,836 - Psest_0532 0.42 -1.9 586,100 - Psest_0532 0.62 -0.2 586,100 - Psest_0532 0.62 -0.3 586,123 + Psest_0532 0.64 +1.0 586,123 + Psest_0532 0.64 +1.1 586,124 - Psest_0532 0.64 -2.2 586,124 - Psest_0532 0.64 -1.5 586,124 - Psest_0532 0.64 -0.5 586,124 - Psest_0532 0.64 -0.2
Or see this region's nucleotide sequence