Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4233

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4232 and Psest_4233 are separated by 350 nucleotidesPsest_4233 and Psest_4234 are separated by 12 nucleotides Psest_4232: Psest_4232 - Sugar phosphate permease, at 4,413,158 to 4,414,516 _4232 Psest_4233: Psest_4233 - Acyl-CoA dehydrogenases, at 4,414,867 to 4,416,009 _4233 Psest_4234: Psest_4234 - Acyl-CoA dehydrogenases, at 4,416,022 to 4,417,218 _4234 Position (kb) 4414 4415 4416 4417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4413.951 kb on - strand, within Psest_4232at 4413.951 kb on - strand, within Psest_4232at 4413.951 kb on - strand, within Psest_4232at 4413.951 kb on - strand, within Psest_4232at 4413.951 kb on - strand, within Psest_4232at 4414.130 kb on + strand, within Psest_4232at 4414.130 kb on + strand, within Psest_4232at 4414.268 kb on + strand, within Psest_4232at 4414.268 kb on + strand, within Psest_4232at 4414.268 kb on + strand, within Psest_4232at 4414.269 kb on - strand, within Psest_4232at 4414.269 kb on - strand, within Psest_4232at 4414.269 kb on - strand, within Psest_4232at 4414.269 kb on - strand, within Psest_4232at 4414.269 kb on - strand, within Psest_4232at 4414.364 kb on + strand, within Psest_4232at 4414.539 kb on - strandat 4414.539 kb on - strandat 4414.555 kb on + strandat 4414.618 kb on + strandat 4414.618 kb on + strandat 4414.640 kb on - strandat 4414.640 kb on - strandat 4414.743 kb on - strandat 4414.770 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.847 kb on + strandat 4414.848 kb on - strandat 4414.848 kb on - strandat 4414.848 kb on - strandat 4414.848 kb on - strandat 4414.848 kb on - strandat 4414.848 kb on - strandat 4414.848 kb on - strandat 4414.892 kb on + strandat 4414.892 kb on + strandat 4414.892 kb on + strandat 4414.893 kb on - strandat 4414.970 kb on + strandat 4414.970 kb on + strandat 4414.970 kb on + strandat 4414.970 kb on + strandat 4414.970 kb on + strandat 4414.970 kb on + strandat 4414.970 kb on + strandat 4414.971 kb on - strandat 4414.971 kb on - strandat 4414.971 kb on - strandat 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.048 kb on + strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.049 kb on - strand, within Psest_4233at 4415.225 kb on + strand, within Psest_4233at 4415.225 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.599 kb on + strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.600 kb on - strand, within Psest_4233at 4415.616 kb on - strand, within Psest_4233at 4416.023 kb on + strandat 4416.024 kb on - strandat 4416.107 kb on + strandat 4416.107 kb on + strandat 4416.107 kb on + strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.108 kb on - strandat 4416.132 kb on - strandat 4416.132 kb on - strandat 4416.158 kb on + strand, within Psest_4234at 4416.159 kb on - strand, within Psest_4234at 4416.228 kb on + strand, within Psest_4234at 4416.228 kb on + strand, within Psest_4234at 4416.229 kb on - strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.503 kb on + strand, within Psest_4234at 4416.504 kb on - strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.767 kb on + strand, within Psest_4234at 4416.768 kb on - strand, within Psest_4234at 4416.871 kb on - strand, within Psest_4234at 4416.881 kb on + strand, within Psest_4234at 4416.882 kb on - strand, within Psest_4234

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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4,413,951 - Psest_4232 0.58 +0.8
4,413,951 - Psest_4232 0.58 -0.7
4,413,951 - Psest_4232 0.58 -1.3
4,413,951 - Psest_4232 0.58 -1.2
4,413,951 - Psest_4232 0.58 -0.7
4,414,130 + Psest_4232 0.72 -0.2
4,414,130 + Psest_4232 0.72 +0.5
4,414,268 + Psest_4232 0.82 -0.0
4,414,268 + Psest_4232 0.82 -0.4
4,414,268 + Psest_4232 0.82 +0.7
4,414,269 - Psest_4232 0.82 -0.4
4,414,269 - Psest_4232 0.82 -2.2
4,414,269 - Psest_4232 0.82 +0.9
4,414,269 - Psest_4232 0.82 +0.0
4,414,269 - Psest_4232 0.82 -3.4
4,414,364 + Psest_4232 0.89 -0.4
4,414,539 - -0.4
4,414,539 - -1.1
4,414,555 + +0.5
4,414,618 + -1.9
4,414,618 + +0.3
4,414,640 - -0.1
4,414,640 - -1.0
4,414,743 - +0.3
4,414,770 + -0.8
4,414,847 + +0.3
4,414,847 + -0.3
4,414,847 + -1.3
4,414,847 + -0.5
4,414,847 + +0.2
4,414,847 + -0.1
4,414,847 + -0.8
4,414,847 + -0.9
4,414,847 + -0.3
4,414,847 + -0.1
4,414,847 + +0.4
4,414,847 + -1.2
4,414,848 - +1.0
4,414,848 - +1.5
4,414,848 - -0.5
4,414,848 - -1.7
4,414,848 - +0.4
4,414,848 - +1.1
4,414,848 - -0.4
4,414,892 + -1.1
4,414,892 + -0.9
4,414,892 + +0.1
4,414,893 - +2.5
4,414,970 + -0.0
4,414,970 + +1.0
4,414,970 + +1.6
4,414,970 + -0.4
4,414,970 + +0.4
4,414,970 + -0.8
4,414,970 + -2.1
4,414,971 - +0.1
4,414,971 - -0.3
4,414,971 - +0.1
4,415,048 + Psest_4233 0.16 +0.1
4,415,048 + Psest_4233 0.16 -0.1
4,415,048 + Psest_4233 0.16 -1.3
4,415,048 + Psest_4233 0.16 -0.8
4,415,048 + Psest_4233 0.16 -0.6
4,415,048 + Psest_4233 0.16 +0.5
4,415,048 + Psest_4233 0.16 +0.5
4,415,048 + Psest_4233 0.16 +1.0
4,415,048 + Psest_4233 0.16 -1.0
4,415,048 + Psest_4233 0.16 +0.6
4,415,048 + Psest_4233 0.16 +0.2
4,415,048 + Psest_4233 0.16 +0.5
4,415,048 + Psest_4233 0.16 +0.7
4,415,048 + Psest_4233 0.16 +0.1
4,415,049 - Psest_4233 0.16 +1.4
4,415,049 - Psest_4233 0.16 +0.5
4,415,049 - Psest_4233 0.16 +1.1
4,415,049 - Psest_4233 0.16 +0.6
4,415,049 - Psest_4233 0.16 -0.8
4,415,049 - Psest_4233 0.16 +0.2
4,415,049 - Psest_4233 0.16 -0.1
4,415,049 - Psest_4233 0.16 -1.1
4,415,049 - Psest_4233 0.16 -0.9
4,415,049 - Psest_4233 0.16 -0.1
4,415,049 - Psest_4233 0.16 +1.8
4,415,049 - Psest_4233 0.16 -1.8
4,415,049 - Psest_4233 0.16 -1.3
4,415,225 + Psest_4233 0.31 -1.4
4,415,225 + Psest_4233 0.31 +0.6
4,415,599 + Psest_4233 0.64 -0.1
4,415,599 + Psest_4233 0.64 -0.5
4,415,599 + Psest_4233 0.64 +0.7
4,415,599 + Psest_4233 0.64 +0.5
4,415,599 + Psest_4233 0.64 +1.3
4,415,600 - Psest_4233 0.64 -1.6
4,415,600 - Psest_4233 0.64 -0.5
4,415,600 - Psest_4233 0.64 +1.6
4,415,600 - Psest_4233 0.64 -0.1
4,415,616 - Psest_4233 0.66 -1.0
4,416,023 + -0.4
4,416,024 - -0.3
4,416,107 + +0.7
4,416,107 + -1.3
4,416,107 + +0.2
4,416,108 - -0.9
4,416,108 - +0.3
4,416,108 - -0.8
4,416,108 - +0.7
4,416,108 - +0.6
4,416,132 - -1.3
4,416,132 - +1.2
4,416,158 + Psest_4234 0.11 +0.2
4,416,159 - Psest_4234 0.11 -0.9
4,416,228 + Psest_4234 0.17 +1.2
4,416,228 + Psest_4234 0.17 -2.6
4,416,229 - Psest_4234 0.17 -0.6
4,416,503 + Psest_4234 0.40 +0.9
4,416,503 + Psest_4234 0.40 +1.1
4,416,503 + Psest_4234 0.40 +0.3
4,416,504 - Psest_4234 0.40 -0.7
4,416,767 + Psest_4234 0.62 -0.3
4,416,767 + Psest_4234 0.62 +0.3
4,416,767 + Psest_4234 0.62 -0.1
4,416,767 + Psest_4234 0.62 -0.9
4,416,767 + Psest_4234 0.62 -1.6
4,416,768 - Psest_4234 0.62 -0.1
4,416,871 - Psest_4234 0.71 -0.7
4,416,881 + Psest_4234 0.72 +1.3
4,416,882 - Psest_4234 0.72 -0.3

Or see this region's nucleotide sequence